CK701855

Overview
NameCK701855
Unique NameCK701855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: RN157_MOUSE (RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 7.979e-18
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 2
Query:    2 EIYGIGNSVD------GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 214
            EIYGI N  +       + D +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  250 EIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: MGRN1_RAT (Probable E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 EIYGIGNSVD-----GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 214
            EIYGI N  +      D + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  253 EIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328          
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: MGRN1_MOUSE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 EIYGIGNSVD-----GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 214
            EIYGI N  +      D + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  252 EIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: MGRN1_HUMAN (Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.042e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 EIYGIGNSVD-----GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 214
            EIYGI N  +      D + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  252 EIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327          
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: RN157_XENLA (RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.322e-17
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 EIYGIGN---SVDGDV---DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI----KVNGP 226
            EIYGI N   S D  V   + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q + CPICR P   LL+I    KV GP
Sbjct:  250 EIYGIENKYNSQDSKVAEDELSDNSAECVVCLSDVRDTLILPCRHLCLCNACADTLRYQASNCPICRLPFRALLQIRAMRKVPGP 334          
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: RN157_HUMAN (RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.322e-17
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 2
Query:    2 EIYGIGNSVD------GDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 214
            EIYGI N  +       + + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  250 EIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIR 326          
BLAST of CK701855 vs. ExPASy Swiss-Prot
Match: MGRN1_DANRE (Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.032e-17
Identity = 38/76 (50.00%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 EIYGIGNSVDGDVDA-----NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 214
            EIYGI N  + +  +     +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:  250 EIYGIENRNNQETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLPFRALLQIR 325          
The following BLAST results are available for this feature:
BLAST of CK701855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RN157_MOUSE7.979e-1850.65RING finger protein 157 OS=Mus musculus GN=Rnf157 ... [more]
MGRN1_RAT1.042e-1751.32Probable E3 ubiquitin-protein ligase MGRN1 OS=Ratt... [more]
MGRN1_MOUSE1.042e-1751.32Probable E3 ubiquitin-protein ligase MGRN1 OS=Mus ... [more]
MGRN1_HUMAN1.042e-1751.32Probable E3 ubiquitin-protein ligase MGRN1 OS=Homo... [more]
RN157_XENLA2.322e-1751.76RING finger protein 157 OS=Xenopus laevis GN=rnf15... [more]
RN157_HUMAN2.322e-1749.35RING finger protein 157 OS=Homo sapiens GN=RNF157 ... [more]
MGRN1_DANRE3.032e-1750.00Probable E3 ubiquitin-protein ligase MGRN1 OS=Dani... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5116 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE41E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK701855 ID=CK701855; Name=CK701855; organism=Citrus sinensis; type=EST; length=457bp
GGAGATATATGGGATTGGGAATTCTGTTGATGGTGATGTCGATGCAAATG
ATCCAGGAAAAGAATGTGTGATTTGCCTATCAGAACCACGGGACACAACT
GTCCTTCCCTGCAGACACATGTGTATGTGCAGTGGTTGTGCGAAGGTACT
GAGGTTCCAAACGAATCGCTGCCCAATTTGCAGACAACCAGTTGAGAGAC
TTTTGGAGATAAAGGTTAATGGGCCTGAAGAGTAGTGAACGAAGATGGAA
GAAGTTGCTGCCGCTCAGTTTATGTATAGTAGTCTGTTGTTGTTGTCTTG
CTTTCCATGCACTTCAAATTTATTTTTCGTTCTTTCTTTCCCTTAGCCAT
TACCTGGAATTGTAATAATCAGACCGAAAGTTATACTCCTTATAATCAGA
CTGAAAGTTTGTACTCCTTAAGTGCTAGTATGGCACTACTATATTACTGA
CTGTATA
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