CK701935

Overview
NameCK701935
Unique NameCK701935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK701935 vs. ExPASy Swiss-Prot
Match: KASC1_HORVU (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14
Identity = 36/44 (81.82%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   28 NLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPFSP 159
            N EPEV  DTV N KKQH VNV ISNSFGFGGHNSVVVFAPF P
Sbjct:  419 NPEPEVDFDTVANEKKQHEVNVGISNSFGFGGHNSVVVFAPFKP 462
[Close]
BLAST of CK701935 vs. ExPASy Swiss-Prot
Match: KASC1_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.949e-11
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   28 NLEPEVTIDTVPNVKKQHHVNVAISNSFGFGGHNSVVVFAPFSP 159
            N E  V  DTVPN KKQH V+VAISNSFGFGGHNSVV F+ F P
Sbjct:  430 NPEQAVDFDTVPNEKKQHEVDVAISNSFGFGGHNSVVAFSAFKP 473
The following BLAST results are available for this feature:
BLAST of CK701935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KASC1_HORVU5.481e-1481.823-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
KASC1_ARATH1.949e-1172.733-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5196 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE43D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK701935 ID=CK701935; Name=CK701935; organism=Citrus sinensis; type=EST; length=420bp
CCTCGTGCCGAATTCGGCACGAGGCAGAACTTGGAGCCTGAGGTTACAAT
CGACACCGTTCCAAATGTGAAGAAACAGCATCACGTTAACGTTGCTATCT
CAAATTCATTTGGCTTTGGTGGTCACAACTCTGTGGTGGTTTTTGCTCCC
TTCTCACCATAAATAAACTGTGGGCCAAAGAATTTCTCTATTTCAACCAT
TCCTTTAACAGAAAATTAATCATTGATTTGAGGCCTTAATTAACATTGCT
TAAAAGCATGGGACGTATAAAGTGATGAAGAAATCATTAATGCTCTGACG
AGTGATGAAGTCACAGTAGCTTCTTTTGCCAATTCATTCAATCCATCACC
ATGCTCGAGTGAGGGCACATTCTCTGTTGTTTCGATTTGAATAAATAACA
CTCATGTAACTTCCCCTATG
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