CK701949

Overview
NameCK701949
Unique NameCK701949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  209 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 80.1073 bits (196), Expect = 1.249e-38
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGR
Sbjct:  171 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGR 208
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.254e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  160 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 80.1073 bits (196), Expect = 1.254e-38
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGR
Sbjct:  122 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGR 159
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.627e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 79.7221 bits (195), Expect = 1.627e-38
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR
Sbjct:  177 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 214
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.761e-38
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 81.6481 bits (200), Expect = 2.761e-38
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR
Sbjct:  183 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.597e-38
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 79.7221 bits (195), Expect = 3.597e-38
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR
Sbjct:  183 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.597e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 78.5666 bits (192), Expect = 3.597e-38
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGR
Sbjct:  181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGR 218
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.686e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 78.1814 bits (191), Expect = 4.686e-38
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR
Sbjct:  183 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.686e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 78.1814 bits (191), Expect = 4.686e-38
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR
Sbjct:  183 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 220
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.686e-38
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  221 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 79.7221 bits (195), Expect = 4.686e-38
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR
Sbjct:  183 LGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 220
[Close]
BLAST of CK701949 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.687e-38
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 3 
Query:  117 VAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
            +AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 78.1814 bits (191), Expect = 4.687e-38
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2 
Query:    2 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 115
            LGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR
Sbjct:  181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGR 218
The following BLAST results are available for this feature:
BLAST of CK701949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB21_CUCSA1.249e-3897.87Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA1.254e-3897.87Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_ORYSJ1.627e-3897.87Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB27_TOBAC2.761e-3893.62Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP3.597e-3895.74Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_ORYSJ3.597e-3897.87Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_TOBAC4.686e-3897.87Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL4.686e-3897.87Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2G_SOLLC4.686e-3895.74Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC4.687e-3897.87Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5210 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE43E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK701949 ID=CK701949; Name=CK701949; organism=Citrus sinensis; type=EST; length=394bp
GCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCAT
TGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAA
ATCAAGAATGGAAGGTGTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTC
AGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTG
GCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCC
CGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGG
ATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTG
ATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAA
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