CK702409

Overview
NameCK702409
Unique NameCK702409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.839e-53
Identity = 101/147 (68.71%), Postives = 121/147 (82.31%), Query Frame = 3
Query:    3 QLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            QL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT              +VILS+CLT+YG+ASF
Sbjct:   11 QLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASF 156          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 1.192e-52
Identity = 103/148 (69.59%), Postives = 120/148 (81.08%), Query Frame = 3
Query:    3 QLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            QL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF
Sbjct:   11 QLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSF 158          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 4.530e-52
Identity = 105/148 (70.95%), Postives = 119/148 (80.41%), Query Frame = 3
Query:    3 QLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            QLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE             VVILS+CLT+YGIASF
Sbjct:   11 QLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASF 155          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.359e-47
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 3
Query:   51 PRGISGSPFRVVPSKRSPRFLVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASF
Sbjct:   23 PRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASF 148          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  147 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+            ++I++ CL IYG+ SF
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSF 101          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.052e-25
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  153 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI            +VIL++ LTIYG+A+F
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAF 101          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.052e-25
Identity = 53/97 (54.64%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  153 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I            ++IL++ LTIYG+A+F
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAF 101          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.060e-24
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  153 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++            ++I SI + IYGI +F
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTF 101          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.219e-24
Identity = 45/99 (45.45%), Postives = 70/99 (70.71%), Query Frame = 3
Query:  147 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSF 102          
BLAST of CK702409 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.219e-24
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  153 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASF 443
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++            ++IL++CL++YG  SF
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSF 101          
The following BLAST results are available for this feature:
BLAST of CK702409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA1.839e-5368.71Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH1.192e-5269.59Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL4.530e-5270.95Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU3.359e-4768.70Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH1.242e-2551.52Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_PHATR8.052e-2555.67Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_ODOSI8.052e-2554.64Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_CYACA3.060e-2448.45Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_THEEB5.219e-2445.45Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_GRATL5.219e-2450.52Photosystem I reaction center subunit XI OS=Gracil... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE52G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK702409 ID=CK702409; Name=CK702409; organism=Citrus sinensis; type=EST; length=444bp
GCCAGCTCAAGAGTAGCTTTACTTCACCAGTTTCCAGGAGCCTGCTTACT
CCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCCAAGAGAAG
CCCTCGTTTCCTTGTCAAAGCTATCCAATCTGAAAAGCCAACTTACCAAG
TTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCA
ATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTA
TCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCC
ATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAAC
ACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGT
GATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCA
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