CK702419

Overview
NameCK702419
Unique NameCK702419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK702419 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.446e-37
Identity = 86/144 (59.72%), Postives = 102/144 (70.83%), Query Frame = 2 
Query:   11 SSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPLLQVRASSSEETSTVDADELFSDLKEKWDAIENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 433
            S+ C A+P L             +K VS +  ++  LL+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV             YTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct:   22 STRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
The following BLAST results are available for this feature:
BLAST of CK702419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH6.446e-3759.72Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE53A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK702419 ID=CK702419; Name=CK702419; organism=Citrus sinensis; type=EST; length=525bp
CAAAGTCAAATCTTCTCACTGCTTTGCTCTTCCCTGCCTCCCTCCTCGTT
CGTCAACGCCACCATTCTCTTCTTCCATTAAACAAGTTTCAGAGTCGAGA
AGGTTTCCTTTGCTTCAGGTTAGAGCCTCTTCCTCAGAAGAGACATCCAC
AGTTGATGCAGATGAACTTTTTTCAGACTTGAAGGAAAAGTGGGATGCCA
TTGAAAACAAGTCCACGGTACTTCTCTATGGAGGTGGGGCAATAGTGGCT
GTTTGGTTATCCTCAACTATTGTTGGTGCCATCAATTCAGTGCCTTTGCT
TCCCAAACTCTTGGAGTTGATTGGACTTGGTTATACTGGATGGTTTGTCT
ACAGATACCTTCTCTTCAAGTCAAGCAGAAAAGAACTAGCCACGGATATT
GAAGCACTGAAGAAGAAGATTGCTGGAACTGAATAGATTGTACATTCTGG
AGGCAATTCATGTTTGTCCCTGATAGTCATTTATTTTGGTCCTCTATCAT
TGCATATGAGGCACTTGTATCCTGT
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