CK702422

Overview
NameCK702422
Unique NameCK702422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK702422 vs. ExPASy Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.560e-32
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 2 
Query:  230 PLLFRHNNLPT---TVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 520
            P++ ++  + T   +V+ + P + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct:   60 PIVLKNKRISTVDSSVSTSSP-SFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158
[Close]
BLAST of CK702422 vs. ExPASy Swiss-Prot
Match: RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  317 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 505
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
[Close]
BLAST of CK702422 vs. ExPASy Swiss-Prot
Match: RL35_ANASP (50S ribosomal protein L35 OS=Anabaena sp. (strain PCC 7120) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  317 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 505
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
The following BLAST results are available for this feature:
BLAST of CK702422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK35_SPIOL1.560e-3272.0050S ribosomal protein L35, chloroplastic OS=Spinac... [more]
RL35_ANAVT1.518e-1157.1450S ribosomal protein L35 OS=Anabaena variabilis (... [more]
RL35_ANASP1.518e-1157.1450S ribosomal protein L35 OS=Anabaena sp. (strain ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5684 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE53B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK702422 ID=CK702422; Name=CK702422; organism=Citrus sinensis; type=EST; length=661bp
CACGTAACACCAATTCATCTTCTTCTTCTTCTTCAATATCCTTGGCAGAA
GATAAAACGAAACGAAAGAAAACATGGCTTCGATGATATCTTTCAATTTA
AAATTTTGCCCACTATGCCCTTCTTCTTCTTCAGTGAGAGCCTCTCGTGG
CTCATCACTCCGACTGGCTCTATCCAACAAGCTTAACAACTCGCTCAGAC
TCAATTCAAGCTACAGCATTTCCGCCTCTCCTTTACTCTTCCGTCATAAC
AACTTACCCACAACAGTTACTCAAAATAGGCCTCAAACGGTCACTGTTTT
TGCCGCAAAAGGTTACAAAATGAAAACCCACAAGGCATCCGCGAAGAGGT
TTAGGGTGACTGGTAAAGGAAAAATATTGAGGAGGAGAGCTGGAAAGCAG
CATTTATTAGCTAAGAAAAACACTAAGAGAAAATTACGCCTCTCTAAAAT
GCACGAGGTTAGCCGAAGTGACTACGACAATGTTATAGGTTGCTTGCCAT
ATCTCAAGGTTAACAGGCAAGCAAAGTAGAAGTGATTTTCACAGTTTGCA
GACGACCTATGTAATTTCCGTTTGCCTGACAGCCTGAATTTCTCACATTT
TGTTTGTTTGCTACAACGAAGTGCTAGCAATTGTTTTATTTACCCTAAAA
AAAAAAAAAAA
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