CK702424

Overview
NameCK702424
Unique NameCK702424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK702424 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.004e-19
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  157 PQARHLRQRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVT 336
            P+     +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG T
Sbjct:   44 PKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKT 103          

HSP 2 Score: 31.9574 bits (71), Expect = 3.004e-19
Identity = 14/31 (45.16%), Postives = 22/31 (70.97%), Query Frame = 2
Query:   41 ASSSLFTPSTITVRKHQISPSSISFQGLRPL 133
            ++S+L +P+T +      +P+SISF GLRPL
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPL 34          
BLAST of CK702424 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  208 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 324
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of CK702424 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1
Query:  202 KAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVT 336
            +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++
Sbjct:   68 RAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMS 111          
BLAST of CK702424 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 41/76 (53.95%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  109 LIPRPKTPQHQGQNPPPQARHLRQRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVT 336
            L P P+         PP  R +  R       A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG T
Sbjct:   19 LAPSPRAAASFRGVSPPARRSVAAR-------AALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKT 86          
The following BLAST results are available for this feature:
BLAST of CK702424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH3.004e-1968.33Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA2.115e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_SPIOL2.338e-1280.00Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU4.410e-1153.95Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5686 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE53B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK702424 ID=CK702424; Name=CK702424; organism=Citrus sinensis; type=EST; length=357bp
CAAAAAAGAAGGAGAAAGAGGGGAAAAAAAGAAAATGGCAGCCTCATCCT
CCTTGTTCACACCCTCCACCATCACCGTCCGAAAACACCAAATTTCACCC
TCCAGCATCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAAC
CCCCCTCCCCAAGCTCGCCACCTCCGCCAAAGAAACAGCTTCGGCGGCAT
TAAAGCTGAGCTGAACACACCACTTGTCATCAGCCTCAGCACTGGCCTCT
CCTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTG
GCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCCACTTTGAAGCCG
GTGATGT
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