CK739465

Overview
NameCK739465
Unique NameCK739465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739465_ssr241 microsatellite CK739465_ssr241:241..255. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK739465 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.029e-27
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 2 
Query:    2 YRTCGEEEVYSWGDWLGAVGFKPVNISFANHCQAKLLLGLFNDGYRVEE--LANNRLVLGWKSRRLLSASVWT-SSLDSNL 235
            YRT GEEE  SWG+WLG VGF+ V +SFANHCQAKLLLGLFNDGYRVEE  + +N+LVL WKSRRLLSAS+WT SS DS+L
Sbjct:  428 YRTGGEEERRSWGEWLGEVGFRGVPVSFANHCQAKLLLGLFNDGYRVEEVGVGSNKLVLDWKSRRLLSASLWTCSSSDSDL 508
[Close]
BLAST of CK739465 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.746e-20
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:   20 EEVYSWGDWLGAVGFKPVNISFANHCQAKLLLGLFNDGYRVEELANNRLVLGWKSRRLLSASVWTS 217
            E   SW  WL   GFKP+ +SF N CQAKLLL LFNDG+RVEEL  N LVLGWKSRRL+SAS W S
Sbjct:  413 ESFASWPQWLETNGFKPLEVSFTNRCQAKLLLSLFNDGFRVEELGQNGLVLGWKSRRLVSASFWAS 478
The following BLAST results are available for this feature:
BLAST of CK739465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NSP2_MEDTR3.029e-2775.31Nodulation-signaling pathway 2 protein OS=Medicago... [more]
SCL26_ARATH2.746e-2068.18Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5927 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739465 ID=CK739465; Name=CK739465; organism=Citrus sinensis; type=EST; length=447bp
CTACAGAACATGCGGAGAGGAGGAGGTTTACTCTTGGGGGGATTGGTTGG
GTGCAGTGGGGTTCAAGCCAGTTAATATAAGCTTCGCCAATCATTGTCAA
GCAAAGCTTTTATTAGGATTATTTAATGATGGCTATAGAGTGGAGGAACT
AGCCAACAATAGGCTTGTTTTAGGGTGGAAATCTAGGCGTCTGCTCTCAG
CTTCTGTGTGGACTTCTTCTCTCGATTCTAATTTGTAAAAAATAATAATA
ATAATATTATTAATAATTAGCTTGCTCATTTTTAGTTGCATCATTTGCTT
CTTTGGGGTGGCCTATTTGTATTGTGTGTTTGTTAGAACTAAGTTATGGG
TTTTGAACCTTCTCAGCAAAATTATGAACCAAAATCTTACTAAAATGTTG
TAATTTACTCTTCAATTTGATTTTGCTGATTCGTTTTGTGTTAAAAA
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