CK739477

Overview
NameCK739477
Unique NameCK739477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1057..1736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.620e-48
Identity = 100/163 (61.35%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG*PP*S*LRGLDGRQSSPANEXXXXXXXXXXXXXNFDPTARSDDGSCQY 492
            DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG           G+ +                  N+DPTARSDDGSC Y
Sbjct:  323 DNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG-----------GQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.002e-47
Identity = 98/164 (59.76%), Postives = 117/164 (71.34%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG*PP*S*LRGLDGRQSSPANEXXXXXXXXXXXXXNFDPTARSDDGSCQYT 495
            DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG       +G     + P  E             NFDPTARSDDGSC YT
Sbjct:  314 DNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG-------QGAQQAGNLPVPE-----GCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.196e-45
Identity = 92/164 (56.10%), Postives = 113/164 (68.90%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG*PP*S*LRGLDGRQSSPANEXXXXXXXXXXXXXNFDPTARSDDGSCQYT 495
            DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYG             + +                 N+DPTARSDDGSC YT
Sbjct:  313 DNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG-------------KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.892e-45
Identity = 89/116 (76.72%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 348
            +DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  322 SDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.332e-42
Identity = 90/165 (54.55%), Postives = 105/165 (63.64%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG*PP*S*LRGLDGRQSSPANEXXXXXXXXXXXXXNFDPTARSDDGSCQYTL 498
            D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G             +++                 N+DPTARSDDGSC Y L
Sbjct:  321 DKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG-------------KAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.332e-42
Identity = 95/163 (58.28%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG*PP*S*LRGLDGRQSSPANEXXXXXXXXXXXXXNFDPTARSDDGSCQY 492
            D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYG       +G   + + P  E             NFDPTARSDDG+C Y
Sbjct:  323 DKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG-------KGAQ-QVNLPVPEGCTDPVAE-----NFDPTARSDDGTCVY 472          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.636e-42
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 348
            DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYG
Sbjct:  310 DNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.286e-41
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 345
            D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  325 DGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 81/113 (71.68%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 342
            DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  323 DNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of CK739477 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    4 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 345
            DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  327 DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of CK739477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR3.620e-4861.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.002e-4759.76Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.196e-4556.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO4.892e-4576.72Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.332e-4254.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.332e-4258.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU8.636e-4271.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.286e-4171.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR7.310e-4171.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC7.310e-4171.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5940 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE56H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739477 ID=CK739477; Name=CK739477; organism=Citrus sinensis; type=EST; length=676bp
AATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTTGACACCTTCCC
CGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGTCTATGATG
ATGAGGTGAGGAATTGGATCTCTGGTATTGGTGTTGGAAGCATTGGCAAG
AGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAGGAT
GACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCAAGAGCAAG
AGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTGAGGCCGCT
CTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTTCTATGGTTA
GCCCCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAAGCAGCCCAG
CAAATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAGAAAC
TTTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACGCTTTA
GGCCTTGTTTCTAAGGGGTGAGAAGTGTCGCACTTTGCTTAGGATGTGAG
ATATTCAAATAATATTGGTGCATTTTCATTTCTTTGTAATAGAAAGAATC
CTCTAATTTTGGTTATATCACAACTCTTTATTCGATCTTTAAAGGGGCTC
CTTCTTACCATTAAAAAAAAAAAAAA
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