CK739492

Overview
NameCK739492
Unique NameCK739492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739492_ssr57 microsatellite CK739492_ssr57:57..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig960 contig Csv1_Contig960:42..468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739492 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.176e-11
Identity = 37/84 (44.05%), Postives = 41/84 (48.81%), Query Frame = 3 
Query:  138 TCPIDTLKLGACVDVXXXXXXXXXXSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXXPIALEVLI-DCGKHPPPGFQC 386
            TCPID LKLGACVDV           SAK  CCP+L G                         PIAL+VLI DCGK+PP  F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of CK739492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC1.176e-1144.0536.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6330 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739492 ID=CK739492; Name=CK739492; organism=Citrus sinensis; type=EST; length=427bp
CCTCGTGCGCACGAGGACCATATGTACCATCACCACCGTATACCCCAAGC
CCTAGCCCACCACCACCACCAAGTGGAACACCGTGTCCTCCGCCGCCGCC
ACCAAAGGTGAGACCGTACCCTCCACCACCATCACAAACTTGTCCCATTG
ATACTCTCAAGCTTGGTGCATGCGTCGACGTGTTGGGCGGTCTAATACAC
ATCGGTATAGGCAGCAGTGCAAAGGACGCTTGCTGCCCCGTGCTGCAGGG
GCTACTGGACTTGGATGCTGCATTATGTCTTTGCACCACCATTAAACTTA
AGCTTTTGAATATCAATCTTATTATACCGATCGCCCTTGAAGTGCTTATT
GACTGCGGCAAGCATCCGCCGCCCGGATTCCAGTGTACTGCCTAATTGGT
GACGCTTTCCAGCCATGCAATTGATGA
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