CK739493

Overview
NameCK739493
Unique NameCK739493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739493_ssr692 microsatellite CK739493_ssr692:692..703. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13796 contig Csv1_Contig13796:631..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 3.115e-69
Identity = 122/136 (89.71%), Postives = 128/136 (94.12%), Query Frame = 1
Query:   10 GSHSVGRTHCVKLVHRLYPEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 417
            GSHSVGRTHCVKLVHRLYPEVDP LNPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:  195 GSHSVGRTHCVKLVHRLYPEVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   10 GSHSVGRTHCVKLVHRLYPEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            G+HSVGR HCV LVHRLYP +DP L+P +  ++  +CP   PDP AV Y RNDR TPMV+DN YY+NI+ +KGL+++D +LATD RT P+V KMA   +YF ++FSR + LLSE NPLTG +GEIRK C   N
Sbjct:  195 GAHSVGRVHCVNLVHRLYPTIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLYPEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            SG H++G  HC     RLYP  DP +N      +   CP A      V    ND  +P V DN YY ++++ +GL   D  L  DKRTR  V+  A  Q  FF  F+ A+  + + + LTGT+GEIR  C+  N
Sbjct:  210 SGGHTIGIAHCPSFTDRLYPNQDPTMNQFFANSLKRTCPTANSSNTQV----NDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARN 339          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLYPEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            SG+H++G +HC +  +R+ P      NP     +   C ++  DP    +  ND  TP   DN Y++NI    GL+  DH L +D RTRP+V+  A+ Q  FF +F+ A+  LS +  LTG +GEIR+ C+  N
Sbjct:  197 SGAHTIGFSHCKEFTNRVNPNNSTGYNPRFAVALKKACSNSKNDPTISVF--NDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDPRTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLYP-----EVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            SG+H++G  HC K+ +RLY       VDP +N D+V  +   CP  I DP+    +  D  TP   DN YY+N+   KGL   D  L TD R++P V   A +   F + F  ++  L      TG+ G IR+ C   N
Sbjct:  194 SGAHTLGFAHCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNI-DPRVA--INMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFTDSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLYPEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            SG+HS+G +HC + V R+    +   NP     +   C +   DP    +  ND  TP   DN YY+N+    GL+  DH L +D RTR +V   AK+QD FFK+F++A+  LS     TG +GEIR+ C+  N
Sbjct:  186 SGAHSIGFSHCKEFVGRVGRN-NTGYNPRFAVALKKACANYPKDPTISVF--NDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLYP-----EVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            SG+H++G  HC K+ +R+Y      +VDP +N D+V  +   CP  I DP+    +  D  TP   DN YY+N+   KGL   D  L TD+R++P V   A +   F + F  ++  L      TG+ G IR+ C   N
Sbjct:  194 SGAHTLGFAHCTKVFNRIYTFNKTTKVDPTVNKDYVTELKASCPRNI-DPRVA--INMDPTTPRQFDNVYYKNLQQGKGLFTSDQVLFTDRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLY-----PEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            SG+H++G  HC K+  R+Y       +DP +N  +V  +   CP  +    A+     D  +P   DN Y++N+   KGL   D  L TD+R+R  V   A S+  F + F  AIT L     LTG  GEIR+ C+  N
Sbjct:  190 SGAHTIGFAHCGKMSKRIYNFSPTTRIDPSINRGYVVQLKQMCPIGVDVRIAINM---DPTSPRTFDNAYFKNLQQGKGLFTSDQILFTDQRSRSTVNSFANSEGAFRQAFITAITKLGRVGVLTGNAGEIRRDCSRVN 325          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 46/137 (33.58%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    7 SGSHSVGRTHCVKLVHRLYPEVDPVLNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 417
            SG H++G +HC +  +R++P+VDP LN      +   C +   +     ++  D  TP   DN Y++N+    GL+  DH L  D  TRP+V+  A +Q  FF++F+RA+  L          GE+R+ C+  NKL+
Sbjct:  191 SGGHTIGFSHCKEFSNRIFPKVDPELNAKFAGVLKDLCKNFETNKTMAAFL--DPVTPGKFDNMYFKNLKRGLGLLASDHILFKDPSTRPFVELYANNQTAFFEDFARAMEKLGRVGVKGEKDGEVRRRCDHFNKLN 325          
BLAST of CK739493 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   10 GSHSVGRTHCVKLVHRLYPEVD---PV-LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 408
            G+H++G +HC +   R++ + D   PV +NP +   +   C +   D +   +  ND  TP   DN YY+N+    GL+  DH +A D RTR  V   A+ +  FF  F++A+  +SE N  TG  GE+R+ C+  N
Sbjct:  188 GAHTIGFSHCKEFASRIFNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAF--NDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
The following BLAST results are available for this feature:
BLAST of CK739493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
PER42_ARATH3.115e-6989.71Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH3.834e-4358.65Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER12_ARATH5.043e-1938.06Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER63_ARATH1.467e-1837.31Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER51_ARATH8.051e-1735.97Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER31_ARATH1.051e-1638.81Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER50_ARATH1.373e-1635.25Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER45_ARATH3.059e-1635.25Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER41_ARATH3.995e-1633.58Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER6_ARATH6.815e-1634.31Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6331 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739493 ID=CK739493; Name=CK739493; organism=Citrus sinensis; type=EST; length=711bp
ATTCCATCAGGATCTCACAGTGTTGGCAGAACTCATTGTGTGAAGCTGGT
GCACCGTCTGTACCCAGAAGTTGACCCTGTACTGAACCCTGACCATGTTC
CGCATATGCTCCATAAGTGTCCTGATGCAATCCCAGACCCCAAGGCTGTT
CAGTATGTGAGGAATGACCGTGGCACACCCATGGTGCTGGACAACAACTA
CTATAGGAACATATTGGACAACAAGGGCTTGATGATGGTTGATCATCAGC
TAGCCACCGACAAGAGGACAAGACCTTATGTTAAGAAGATGGCCAAGAGT
CAAGACTACTTCTTCAAGGAATTTTCAAGAGCCATTACTCTCCTTTCTGA
GAACAACCCTCTCACAGGTACAAAGGGTGAGATCCGAAAGGTTTGCAATC
TTGCCAACAAGCTCCACGACAAGTCCTAGCTAGCTAACAGCTGTATTAGC
TACAACAAGTTAATAGCTCCAAATTTTTCTTCCTTGTTTCTTCTATGAGG
AAGAAAAGAGTGTGAGATGAGCTCCCAATAAGATGGTTTTTCTAGATCGG
TTTGTTTCCTGTGAGATGTTCGTATTACTGCTATTATGTTCCTTAGATGT
ACCGTCCAATGTTTAAGCCTAGGCTTTCCTTTTCCTCGATGGTGTGAGCT
TGATGTTATTAATATTCAGTAATGGCAGTGGTAGATGAGGGATGTATGTA
TGTATGCAGGG
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