CK739498

Overview
NameCK739498
Unique NameCK739498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3398 contig Csv1_Contig3398:257..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_GALSU (Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.804e-20
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  136 RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 342
            R ++L+IA IFRAR VD+S+  I LE+TGD  KI A+++LLE YGICE+ARTG++AL RES +++  LR
Sbjct:   98 RNEILEIANIFRARVVDLSESFIILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRESKINTEILR 166          

HSP 2 Score: 30.4166 bits (67), Expect = 7.804e-20
Identity = 12/29 (41.38%), Postives = 23/29 (79.31%), Query Frame = 2
Query:   11 IGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            I ++ + L+KL+++ ++QDIT++P  ERE
Sbjct:   57 IEQITKHLYKLVNVLKIQDITNIPCVERE 85          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_SYNY3 (Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803) GN=ilvH PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.909e-19
Identity = 36/69 (52.17%), Postives = 58/69 (84.06%), Query Frame = 1
Query:  136 RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 342
            R +V+++A++FRAR VD+S+ T+T+E+ GD  K++A+ ++L  +GI EVARTG++ALVRESGV++ YL+
Sbjct:   98 RAEVIELAQVFRARIVDISEDTVTIEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRESGVNTEYLK 166          

HSP 2 Score: 31.5722 bits (70), Expect = 2.909e-19
Identity = 14/32 (43.75%), Postives = 23/32 (71.88%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            + +I +L + L+KL+++ +VQDIT  P  ERE
Sbjct:   54 ENTIEQLTKQLYKLVNVIKVQDITETPCVERE 85          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_CYACA (Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.558e-17
Identity = 33/77 (42.86%), Postives = 58/77 (75.32%), Query Frame = 1
Query:  130 AARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 360
            ++R ++L I ++FRA+ VD+S++ + LELTGD  K+ A+Q+LL+ +GI E+ARTG++AL R S V++ +L+   + +
Sbjct:   96 SSRPEILSILQVFRAKVVDLSENLLVLELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTRTSKVNTEFLKSISMEI 172          

HSP 2 Score: 30.4166 bits (67), Expect = 5.558e-17
Identity = 12/32 (37.50%), Postives = 23/32 (71.88%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            D ++ +L + L+KL+++ +V +IT +P  ERE
Sbjct:   54 DRTVEQLTKQLYKLVNILKVDNITEIPCVERE 85          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_PORPU (Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.222e-17
Identity = 33/69 (47.83%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  136 RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 342
            R + L+I KIFRA  VD+++  I +E+TGD  KI+A+++LL  +GI E+ARTG+++LVR S +++ YL+
Sbjct:   98 RIEALEIVKIFRANVVDIAEDLIIVEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLK 166          

HSP 2 Score: 32.3426 bits (72), Expect = 7.222e-17
Identity = 13/32 (40.62%), Postives = 24/32 (75.00%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            + +I +L + L+KL+++  VQD+T++P  ERE
Sbjct:   54 NRTIEQLTKQLYKLVNILNVQDVTNIPSVERE 85          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_PORYE (Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.587e-16
Identity = 31/69 (44.93%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  136 RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 342
            R + L+I +IFRA+ VD+++  + +E+TGD  KI+A+++LL  +GI E+ARTG++ LVR S +++ YL+
Sbjct:   98 RTEALEIVRIFRAKIVDIAEDLLIIEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLK 166          

HSP 2 Score: 32.3426 bits (72), Expect = 1.587e-16
Identity = 13/32 (40.62%), Postives = 24/32 (75.00%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            + +I +L + L+KL+++  VQD+T++P  ERE
Sbjct:   54 NRTIEQLTKQLYKLVNILNVQDVTNIPSVERE 85          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_GUITH (Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.683e-15
Identity = 31/68 (45.59%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  136 RRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYL 339
            R + LDI  IFRA+ VD+S+  + +E+TGD  KI+A++++L  + I E+ RTG+++LVRES V++  L
Sbjct:   98 RTEALDIINIFRAKVVDLSEDFLIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRESNVNTRSL 165          

HSP 2 Score: 33.113 bits (74), Expect = 1.683e-15
Identity = 14/32 (43.75%), Postives = 25/32 (78.12%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            + +I +L + L+KL+++ +V+DIT+LP  ERE
Sbjct:   54 ERTIEQLTKQLYKLVNILKVEDITNLPTVERE 85          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_AQUAE (Acetolactate synthase small subunit OS=Aquifex aeolicus GN=ilvH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.302e-14
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  133 ARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV 324
            AR +VL I +IFR + VDVS  T T+E+TGD +KI A+  LL+P+GI E+ARTG+VA+ RE  +
Sbjct:  123 ARDEVLRITEIFRGKVVDVSPDTYTIEVTGDEDKINAMIELLKPFGIKEMARTGKVAMRREMSI 186          

HSP 2 Score: 28.8758 bits (63), Expect = 2.302e-14
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            D  I ++V+ L +LID  +V D+T +P  ERE
Sbjct:   79 DIVIEQVVKQLRRLIDTLKVSDLTDVPHVERE 110          
BLAST of CK739498 vs. ExPASy Swiss-Prot
Match: ILVH_BACSU (Acetolactate synthase small subunit OS=Bacillus subtilis GN=ilvH PE=3 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 5.894e-11
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  112 KLL*IPAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 312
            K++  P+ R ++  I + FRA  VDVS  +I +++TG+ NKI AL  LL+PYGI E+ARTG  A  R
Sbjct:   91 KVVSAPSTRTEINGIIEPFRASVVDVSRDSIVVQVTGESNKIEALIELLKPYGIKEIARTGTTAFAR 157          

HSP 2 Score: 24.6386 bits (52), Expect = 5.894e-11
Identity = 11/32 (34.38%), Postives = 20/32 (62.50%), Query Frame = 2
Query:    2 DESIGKLVQLLHKLIDLHEVQDITHLPFAERE 97
            +  + +L + L+K ID+ +V DIT+    +RE
Sbjct:   55 ENDVEQLTKQLNKQIDVLKVTDITNQSIVQRE 86          
The following BLAST results are available for this feature:
BLAST of CK739498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ILVH_GALSU7.804e-2057.97Acetolactate synthase small subunit OS=Galdieria s... [more]
ILVH_SYNY32.909e-1952.17Acetolactate synthase small subunit OS=Synechocyst... [more]
ILVH_CYACA5.558e-1742.86Acetolactate synthase small subunit OS=Cyanidium c... [more]
ILVH_PORPU7.222e-1747.83Acetolactate synthase small subunit OS=Porphyra pu... [more]
ILVH_PORYE1.587e-1644.93Acetolactate synthase small subunit OS=Porphyra ye... [more]
ILVH_GUITH1.683e-1545.59Acetolactate synthase small subunit OS=Guillardia ... [more]
ILVH_AQUAE2.302e-1454.69Acetolactate synthase small subunit OS=Aquifex aeo... [more]
ILVH_BACSU5.894e-1147.76Acetolactate synthase small subunit OS=Bacillus su... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6336 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE62B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739498 ID=CK739498; Name=CK739498; organism=Citrus sinensis; type=EST; length=456bp
TGATGAGTCAATTGGCAAGTTGGTTCAGCTATTGCACAAGCTAATAGATC
TCCACGAGGTTCAAGATATAACTCACTTGCCATTTGCCGAGCGAGAGCCT
GATATTAATAAAAATTGCTGTAAATACCTGCTGCTAGGAGGGATGTCCTT
GACATTGCCAAAATATTCCGGGCCAGAGCAGTTGACGTGTCTGATCATAC
AATTACTCTTGAGCTTACAGGCGATTTAAACAAAATTATTGCATTGCAGC
GGTTATTAGAGCCCTATGGAATTTGTGAGGTGGCTCGGACTGGGAGAGTT
GCATTGGTGCGAGAGTCGGGTGTGGATTCCACATATCTACGCGGATATCC
GCTACCTTTATAAACAACTGGAGATTTTGCTGCTTCCCTTGCCAACTATC
TTAAGAAGGATTTGTTTTCCTTGGACTATTCTTAACAGTTGGTTAACACC
TATATC
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