CK739600

Overview
NameCK739600
Unique NameCK739600
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1212 contig Csv1_Contig1212:77..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739600 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.492e-38
Identity = 75/133 (56.39%), Postives = 101/133 (75.94%), Query Frame = 3
Query:   66 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWGSAALTDENTCTDG 464
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++  AKG DF + MSNVETW SAALTDE TC DG
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDG 152          
BLAST of CK739600 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 3
Query:   93 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWGSAALTDENTCTDG 464
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T  SAA+T++ TC DG
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKK--SLSQHADDLKTLMSAAMTNQGTCLDG 192          
BLAST of CK739600 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 41/126 (32.54%), Postives = 71/126 (56.35%), Query Frame = 3
Query:   93 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWGSAALTDENTCTDG 464
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T  SAA+T++ TC DG
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKK--SLSQHADDLKTLMSAAMTNQGTCLDG 192          
BLAST of CK739600 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 3
Query:   93 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWGSAALTDENTCTD 461
            +++ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R  +AI  C    GD +DRL+ S+  L  +           +SNVETW SAALTD++TC D
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA--SVSNVETWLSAALTDQDTCLD 194          
The following BLAST results are available for this feature:
BLAST of CK739600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
21KD_DAUCA2.492e-3856.3921 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI6.180e-1332.54Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI6.180e-1332.54Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_PHAVU3.391e-1134.96Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_5987 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739600 ID=CK739600; Name=CK739600; organism=Citrus sinensis; type=EST; length=465bp
ACATGGCAAAAACAGGCTGTCTTTTGCTATTGCTCTCTCTCCTCTACATT
ATAAGCTTGGTCACAGCTGCCGGGATTGCTGACACAAGATTTATCAGAAG
TTCTTGCAAATCCACAACTTATCCAGCGCTGTGCGTGCAGTCTCTCTCAG
CTTATGCCCCATCAATTCAACAAAGCCCCCGGCAACTGGCTGTCACAGCC
TTGTCCGTGAGCCTCTCCAGGGCCCAATCCGCAAAGTCATTCGTGACCAA
GCTGAGGAAGTTCAGGAACCTGAAGCACAGAGAGTATGAGGCGATTGCCG
ACTGCTTGGATGAGATGGGTGACACTGTGGACCGGCTCAGCAAGTCGGTT
CAGGAGCTGAACCACATGGGTCAGGCCAAGGGTCAGGACTTTCTGTGGCA
CATGAGCAACGTTGAGACATGGGGTAGTGCTGCTTTGACTGATGAGAACA
CTTGTACTGATGGGT
back to top