CK739645

Overview
NameCK739645
Unique NameCK739645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2943 contig Csv1_Contig2943:209..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 2.348e-62
Identity = 111/132 (84.09%), Postives = 124/132 (93.94%), Query Frame = 3
Query:   45 GGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKS 440
            G + K+FTL+EVS+HN   DCW++INGKVY+VTKFLEDHPGGD+VLLS+TGKDATDDFEDVGHS SAREMM+QYYVGEID +TIPKK +YTPPKQPHYNQDKTSEFII+LLQFLVPLAILGLAVGIRIYTKS
Sbjct:    2 GDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVGIRIYTKS 133          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.682e-60
Identity = 107/133 (80.45%), Postives = 120/133 (90.23%), Query Frame = 3
Query:   45 GGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 443
            GG+ KVFTLAEVS HNN KDCWL+I+GKVYDVTKFL+DHPGGDEVLLSATGKDATDDFEDVGHS SAR M+D+YYVG+ID +TIP K +YTPP QPHYNQDKTSEF+++LLQFLVPL ILG+A GIR YTK S
Sbjct:    2 GGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQFLVPLIILGVAFGIRFYTKQS 134          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.860e-59
Identity = 106/133 (79.70%), Postives = 119/133 (89.47%), Query Frame = 3
Query:   45 GGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 443
            GG  KVFTLAEVS+HNN KDCWLII+GKVY+VTKFLEDHPGG EVLLSATGKDATDDFED+GHS SAR M+D+YYVG+ID STIP K +YTPPKQPHYNQDKT+EFI++LLQFLVPL ILG+A G+  YTK S
Sbjct:    2 GGQSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQFLVPLIILGVAFGVHFYTKQS 134          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 6.616e-57
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 3
Query:   54 GKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 443
            GK+FTLAEV+ HNN KDCWLIINGKVYDVTKFLEDHPGGD+VLLSATGKDATDDFED+GHS SA+ M+D+YYVG+ID S+IP + +YTPPKQP YN DKT EF+I+LLQFLVPL IL  A+GIR YTKSS
Sbjct:    2 GKIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREFVIKLLQFLVPLVILAGAIGIRFYTKSS 131          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.514e-56
Identity = 102/134 (76.12%), Postives = 117/134 (87.31%), Query Frame = 3
Query:   39 MGGGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKS 440
            M   + KV+TL EV+ HN+  DCWLII GKVY+V+KFLEDHPGGD+VLLS+TGKDATDDFEDVGHS +AR MMD+YYVG+ID STIP + +Y PPKQPHYNQDKT EFII++LQFLVPLAILGLAV IRIYTKS
Sbjct:    1 MSNDNKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGLAVAIRIYTKS 134          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.093e-51
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 3
Query:   48 GDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTKSS 443
            G  KV++LAEVS+H+   DCWL+I GKVYDVTKFL+DHPGG +VLLS+T KDATDDFED+GHS SAR MMD+  VG+ID STIP K  YTPPKQP YNQDKT +FII+LLQFLVPL ILG+AVGIR Y K S
Sbjct:    2 GGSKVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQFLVPLIILGVAVGIRFYKKQS 133          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.977e-49
Identity = 89/129 (68.99%), Postives = 109/129 (84.50%), Query Frame = 3
Query:   51 DGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTK 437
            D KV +  EVS HN  KDCWLII+GKVYDVT F++DHPGGDEVLLS+TGKDAT+DFEDVGHS +AR+MMD+Y++GEID S++P  + Y  P+QP YNQDKT EFII++LQFLVP+ ILGLA+ +R YTK
Sbjct:    4 DRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQFLVPILILGLALVVRHYTK 132          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.520e-48
Identity = 88/127 (69.29%), Postives = 106/127 (83.46%), Query Frame = 3
Query:   57 KVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAVGIRIYTK 437
            KV    EVS HN  KDCWLII+GKVYDVT F++DHPGGDEVLLS+TGKDAT+DFEDVGHS +AR+MM++YY+GEID ST+P  + Y  P QP YNQDKT EF+I++LQFLVP+ ILGLA+ +R YTK
Sbjct:    6 KVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQFLVPILILGLALVVRQYTK 132          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 3
Query:   39 MGGGDGKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI---DVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLV 389
            M   + K FT AEV+ HN  KD WL+I+  +YDVT FL +HPGG+EVL+   GKDAT++FEDVGHS  AR+MM +Y +GE+   + +++ +K E T   +    +     +++ L+  LV
Sbjct:    1 MSSEETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVESERTSVAQKSEPTWSTEQQTEESSVKSWLVPLVLCLV 120          
BLAST of CK739645 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.163e-23
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   63 FTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTI-PKKKEYTPPK 326
            + L EV+  N+ ++ W++I+G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHSP AREM+ QYY+G++  S + PK  +  P K
Sbjct:   23 YRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPKGDDKDPSK 111          
The following BLAST results are available for this feature:
BLAST of CK739645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CYB52_ARATH2.348e-6284.09Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_TOBAC1.682e-6080.45Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC1.860e-5979.70Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_BOROF6.616e-5778.46Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_ORYSJ2.514e-5676.12Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_CUSRE1.093e-5172.73Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB51_ARATH2.977e-4968.99Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB2.520e-4869.29Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_DROME1.645e-2343.33Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB5B_MOUSE8.163e-2351.69Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6032 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739645 ID=CK739645; Name=CK739645; organism=Citrus sinensis; type=EST; length=564bp
TTACCTACATTGTTGAAGAGAGCTGAAGGGAGCATACAATGGGTGGTGGT
GATGGCAAGGTCTTCACTTTGGCTGAAGTATCTGATCACAACAACATGAA
AGATTGTTGGCTCATCATCAATGGCAAGGTGTATGACGTGACAAAATTCT
TGGAAGATCATCCTGGAGGTGATGAAGTTTTGCTGTCTGCAACAGGGAAG
GATGCCACGGATGACTTTGAAGATGTGGGTCATAGTCCGAGTGCCAGAGA
AATGATGGACCAGTACTACGTCGGAGAGATTGATGTATCGACCATCCCAA
AGAAAAAGGAGTATACACCTCCAAAGCAGCCTCACTACAACCAGGACAAG
ACATCAGAGTTCATCATCAGGCTTCTCCAATTCCTTGTGCCGCTAGCAAT
CCTGGGGTTGGCCGTCGGCATCCGGATTTATACAAAATCATCTTAATGTT
CTAGACTATGTTCTCATAACAGACAATTTGTGTCATCTTAATGTTCTAGA
TTATGTTTTCATAACAGACAATTTGTGTTTTGTTAATGAAACTTTCTTAG
TTCTGATAAAAAAA
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