CK739653

Overview
NameCK739653
Unique NameCK739653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6033 contig Csv1_Contig6033:867..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739653 vs. ExPASy Swiss-Prot
Match: GP107_MOUSE (Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.747e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   53 SKRVNLLCEAEDKSYIKRTG-SAHGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLHDKEKKVLMIVIPLQVVANIA 289
            +K ++L+  A D  YI   G    GW V++Y+   LKG  LF  I LIGTGW+F+K  L DK+KK+ MIVIPLQV+AN+A
Sbjct:  303 TKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVA 382          
BLAST of CK739653 vs. ExPASy Swiss-Prot
Match: GP107_HUMAN (Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.747e-15
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   53 SKRVNLLCEAEDKSYIKRTG-SAHGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLHDKEKKVLMIVIPLQVVANIA 289
            +K ++L+  A D  YI   G    GW V++Y+   LKG  LF  I LIGTGW+F+K  L DK+KK+ MIVIPLQV+AN+A
Sbjct:  304 TKSLSLVFHAIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVA 383          
BLAST of CK739653 vs. ExPASy Swiss-Prot
Match: GP108_HUMAN (Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.872e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   53 SKRVNLLCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLHDKEKKVLMIVIPLQVVANIA 289
            +K ++LL  + +  +I   G    G  V++Y+   LKG  LF  I LIG+GW+F+K  L DKEKKV  IVIP+QV+AN+A
Sbjct:  302 TKSISLLFHSINYYFINSQGHPIEGLAVMYYIAHLLKGALLFITIALIGSGWAFIKYVLSDKEKKVFGIVIPMQVLANVA 381          
BLAST of CK739653 vs. ExPASy Swiss-Prot
Match: GP108_RAT (Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.531e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   53 SKRVNLLCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLHDKEKKVLMIVIPLQVVANIA 289
            +K V+LL  + +  +I   G    G  V+ Y+   LKG  LF  I LIG+GW+F+K  L DKEKK+  IVIPLQV+AN+A
Sbjct:  335 TKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVA 414          
BLAST of CK739653 vs. ExPASy Swiss-Prot
Match: GP108_MOUSE (Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.531e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   53 SKRVNLLCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLHDKEKKVLMIVIPLQVVANIA 289
            +K V+LL  + +  +I   G    G  V+ Y+   LKG  LF  I LIG+GW+F+K  L DKEKK+  IVIPLQV+AN+A
Sbjct:  328 TKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVA 407          
BLAST of CK739653 vs. ExPASy Swiss-Prot
Match: GP108_BOVIN (Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.531e-11
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   53 SKRVNLLCEAEDKSYIKRTGSA-HGWDVLFYMFSFLKGITLFTLIVLIGTGWSFLKPYLHDKEKKVLMIVIPLQVVANIA 289
            +K V+LL  + +  +I   G    G  V+ Y+   LKG  LF  I LIG+GW+F+K  L DKEKK+  IVIPLQV+AN+A
Sbjct:  307 TKSVSLLFHSINYYFINSQGHPIEGLAVMHYITHLLKGALLFITIALIGSGWAFVKYVLSDKEKKIFGIVIPLQVLANVA 386          
The following BLAST results are available for this feature:
BLAST of CK739653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GP107_MOUSE1.747e-1551.25Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2[more]
GP107_HUMAN1.747e-1551.25Protein GPR107 OS=Homo sapiens GN=GPR107 PE=2 SV=1[more]
GP108_HUMAN6.872e-1246.25Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=2[more]
GP108_RAT1.531e-1147.50Protein GPR108 OS=Rattus norvegicus GN=Gpr108 PE=2... [more]
GP108_MOUSE1.531e-1147.50Protein GPR108 OS=Mus musculus GN=Gpr108 PE=2 SV=1[more]
GP108_BOVIN1.531e-1147.50Protein GPR108 OS=Bos taurus GN=GPR108 PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6040 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739653 ID=CK739653; Name=CK739653; organism=Citrus sinensis; type=EST; length=292bp
AAACGACTCACTGTTTTCCGCATCCACTTTTTCATGCTCGCCGTCGTGGT
CCTCAAAGCGGGTGAACCTCTTGTGCGAGGCCGAAGATAAATCGTACATC
AAACGCACCGGCAGCGCCCACGGCTGGGACGTCTTGTTTTACATGTTCAG
TTTCCTGAAAGGAATCACGCTTTTCACGTTGATCGTTTTGATCGGTACCG
GATGGTCCTTTTTGAAGCCGTATCTCCATGATAAAGAGAAGAAAGTCCTG
ATGATCGTGATCCCACTCCAGGTCGTTGCTAATATTGCGCAG
back to top