CK739668

Overview
NameCK739668
Unique NameCK739668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:148..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739668 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.051e-13
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:  113 RREAAYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCG 259
            ++ ++Y AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   18 KKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64

HSP 2 Score: 31.5722 bits (70), Expect = 1.051e-13
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:   60 MSDTCGNCDCA*QEPVCEEG 119
            MSDTCGNCDCA +    ++G
Sbjct:    1 MSDTCGNCDCADKTQCVKKG 20
The following BLAST results are available for this feature:
BLAST of CK739668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MT3_CARPA1.051e-1353.06Metallothionein-like protein type 3 OS=Carica papa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6055 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739668 ID=CK739668; Name=CK739668; organism=Citrus sinensis; type=EST; length=396bp
CGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAATTCCAAGTTCTAAGC
TCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCCTGACAGGA
GCCAGTGTGTGAAGAAGGGAAGCAGCCTATGCTGCTGACTTCGTCGAGAC
TGACTTGAGCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTG
AGACTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGC
ACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGC
TGCAAGTGTGCCTAAATATTGGGGGGGTTAAGAATAATGTAAGGGGGATT
AAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATGATGGGCTACT
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