CK739678

Overview
NameCK739678
Unique NameCK739678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8206 contig Csv1_Contig8206:389..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 5.126e-72
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFT QNSI+FAGPLATTSISTNAKFEVRSPKRVQIKFEEG+IGTPQVTDSLV+PENVEFLG KIDLSPFK
Sbjct:  132 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFK 255          

HSP 2 Score: 55.0694 bits (131), Expect = 5.126e-72
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            EIDNLKKALVDSFYGTDRGLNATSET
Sbjct:   95 EIDNLKKALVDSFYGTDRGLNATSET 120          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 1.118e-62
Identity = 110/124 (88.71%), Postives = 116/124 (93.55%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            E+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEEISQTIDSE+FT QNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ+TDS+V+PENVEFLG KIDLSPFK
Sbjct:  135 ESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFK 258          

HSP 2 Score: 38.891 bits (89), Expect = 1.118e-62
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            EI+ LKK L DS YGT+RGL+A+SET
Sbjct:   98 EIELLKKQLADSLYGTNRGLSASSET 123          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 2.478e-62
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            E+KNP PAPTEALTLLN KWIL YTSFSGLFPLLSRG LPL RVEEISQTIDSE+FT QNS+ FAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQ+TDS+V+PENVEFLG KID+SPFK
Sbjct:  135 ESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFK 258          

HSP 2 Score: 38.891 bits (89), Expect = 2.478e-62
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            EI+ LKK L DS YGT+RGL+A+SET
Sbjct:   98 EIELLKKQLADSLYGTNRGLSASSET 123          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.313e-57
Identity = 98/124 (79.03%), Postives = 112/124 (90.32%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            E+KNPTPAPT+AL LLN KWIL YTSF GLFPLLSRG +PL +V+EISQTIDS+NFT +NS+ FAGPLATTSISTNAKFE+RSPKRVQIKFEEG+IGTPQ+TDS+ IPE VEFLG KIDL+P +
Sbjct:  128 ESKNPTPAPTDALFLLNGKWILAYTSFVGLFPLLSRGIVPLVKVDEISQTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQKIDLTPIR 251          

HSP 2 Score: 40.0466 bits (92), Expect = 1.313e-57
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            E + LK++LVDS YGTDRGL+A+SET
Sbjct:   91 ETEVLKRSLVDSLYGTDRGLSASSET 116          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.944e-57
Identity = 98/123 (79.67%), Postives = 112/123 (91.06%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPF 484
            E+KNPTPAPTEALTLLN KWIL YT+F+GLFPLLSR  LPL +VEEISQTIDSEN T QNS++F+GPLATTSI+TNAKFEVRSP RV IKFEEG+IGTPQ+TDS+VIP+NV+FLG KID +PF
Sbjct:  132 ESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSRN-LPLVKVEEISQTIDSENLTVQNSVQFSGPLATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPF 253          

HSP 2 Score: 40.817 bits (94), Expect = 4.944e-57
Identity = 19/26 (73.08%), Postives = 21/26 (80.77%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            EI  LKKALVDSFYGTDRGL  + +T
Sbjct:   95 EIYKLKKALVDSFYGTDRGLRVSRDT 120          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.863e-56
Identity = 96/124 (77.42%), Postives = 109/124 (87.90%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            E+KNPTPAPTEAL LLN KWIL YTSF  LFPLLSRG +PL +V+EISQTIDS+NFT QNS+RFAGPL T SISTNAKFE+RSPKRVQIKFE+G+IGTPQ+TDS+ IPE VE LG KIDL+P +
Sbjct:  119 ESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIR 242          

HSP 2 Score: 41.2022 bits (95), Expect = 1.863e-56
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            E + LK++LVDS YGTDRGL+A+SET
Sbjct:   82 ETERLKRSLVDSLYGTDRGLSASSET 107          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.364e-54
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            E+KNPTPAP EAL LLN KWIL YTSF GLFPLLSR   PL +V+EISQTIDS++FT QNS+RFAGP +TTS STNAKFE+RSPKRVQIKFE+G+IGTPQ+TDS+ IPE+VE LG KIDL+P K
Sbjct:  127 ESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIK 250          

HSP 2 Score: 36.965 bits (84), Expect = 6.364e-54
Identity = 15/26 (57.69%), Postives = 21/26 (80.77%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            E + LK++L DS YGTDRGL+ +S+T
Sbjct:   90 ETERLKRSLADSLYGTDRGLSVSSDT 115          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.838e-53
Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLP-LARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            EA+NPTPAPTEALTLLN KWIL YTSFS LFPLL  G+LP L +VEEISQTIDSENFT QN I+F+GPLATTS+STNAKFEVRSPKRVQIKF+EGIIGTPQ+TDS+V+PE  E  G  IDL+P K
Sbjct:  128 EARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLK 252          

HSP 2 Score: 32.3426 bits (72), Expect = 1.838e-53
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            E+  LK  L ++ YGT+RGL A+SET
Sbjct:   91 EVAELKAKLKEALYGTERGLRASSET 116          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.070e-53
Identity = 94/124 (75.81%), Postives = 107/124 (86.29%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSPFK 487
            E+KNP PAP EAL LLN KWILVYTSF GLFPLLSR   PL +V+EISQTIDS++FT  NS+RFA PLATTS+STNAKFEVRSPKRVQ+KFE+G+IGTPQ+TDS+ IPE VE LG KIDL+P K
Sbjct:  136 ESKNPNPAPNEALFLLNGKWILVYTSFVGLFPLLSRRISPLVKVDEISQTIDSDSFTVHNSVRFASPLATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIK 259          

HSP 2 Score: 36.5798 bits (83), Expect = 4.070e-53
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = 3
Query:    3 EIDNLKKALVDSFYGTDRGLNATSET 80
            E + LK+ L  S YGTDRGL+A+SET
Sbjct:   99 ETERLKRVLAGSLYGTDRGLSASSET 124          
BLAST of CK739678 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.756e-32
Identity = 58/122 (47.54%), Postives = 84/122 (68.85%), Query Frame = 2
Query:  116 EAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTGQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQVTDSLVIPENVEFLGPKIDLSP 481
            EA NPTPAP E   LLN  W+L+YT+ S L PLL+ G+LPL ++++ISQTID+++FT  NS   + P A+ S S +A FEVRSP R+Q+ F+EG +  P++   + +PEN+   G ++ L P
Sbjct:  168 EAANPTPAPVEEPDLLNGNWVLLYTASSELLPLLAAGSLPLLKLDKISQTIDTDSFTVVNSTTLSSPFASFSFSVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGP 289          

HSP 2 Score: 30.0314 bits (66), Expect = 5.756e-32
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 3
Query:    6 IDNLKKALVDSFYGTDRGLNATSE 77
            ++ LK++LVD+ YGT+ G  A SE
Sbjct:  132 LEGLKRSLVDTVYGTELGFRARSE 155          
The following BLAST results are available for this feature:
BLAST of CK739678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN5.126e-7295.97Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLTU1.118e-6288.71Light-induced protein, chloroplastic OS=Solanum tu... [more]
LIPC_SOLDE2.478e-6287.90Light-induced protein, chloroplastic OS=Solanum de... [more]
PAP2_BRACM1.313e-5779.03Plastid lipid-associated protein 2, chloroplastic ... [more]
CHRC_CUCSA4.944e-5779.67Chromoplast-specific carotenoid-associated protein... [more]
PAP2_ARATH1.863e-5677.42Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH6.364e-5475.81Probable plastid-lipid-associated protein 1, chlor... [more]
PAP2_ORYSJ1.838e-5378.40Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_BRACM4.070e-5375.81Plastid lipid-associated protein 1, chloroplastic ... [more]
PG1_PEA5.756e-3247.54Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6065 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739678 ID=CK739678; Name=CK739678; organism=Citrus sinensis; type=EST; length=489bp
CAGAGATTGATAATTTGAAGAAAGCGCTTGTGGATTCGTTTTATGGGACC
GATCGTGGATTGAATGCCACAAGTGAGACGAGGGCCTGAGATCGTTGAGC
TTATTACGCAGCCTTGAGGCTAAGAATCCAACCCCGGCTCCCACCGAGGC
CTTAACTCTGCTAAATGCCAAATGGATTCTTGTGTACACATCTTTTTCAG
GGTTGTTTCCGTTGTTGTCAAGGGGAACATTGCCATTGGCGAGGGTGGAG
GAGATATCTCAGACAATTGACTCAGAGAACTTCACGGGCCAGAACTCCAT
CCGGTTTGCTGGGCCATTGGCTACAACTTCCATTAGTACCAATGCCAAGT
TTGAAGTGCGGAGCCCCAAGCGTGTGCAGATCAAGTTCGAGGAAGGGATC
ATTGGGACGCCTCAGGTAACTGATTCACTAGTGATACCGGAAAATGTCGA
ATTCTTGGGACCAAAGATTGATCTCTCACCCTTCAAAGG
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