CK739690

Overview
NameCK739690
Unique NameCK739690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:1038..1493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739690 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.279e-71
Identity = 114/126 (90.48%), Postives = 121/126 (96.03%), Query Frame = 1
Query:   79 ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTA 456
            ENGM+EDLAYKNTVE ITG+ISK ISTQGMLAVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTA
Sbjct:  324 ENGMSEDLAYKNTVESITGVISKTISTQGMLAVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTA 449          

HSP 2 Score: 51.9878 bits (123), Expect = 3.279e-71
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 3
Query:    3 DIFGERGILLGAVHGIVESLFRRFT 77
            DIFGERGILLGAVHGIVESLFRR+T
Sbjct:  299 DIFGERGILLGAVHGIVESLFRRYT 323          
BLAST of CK739690 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 3.903e-69
Identity = 110/126 (87.30%), Postives = 117/126 (92.86%), Query Frame = 1
Query:   79 ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTA 456
            ENGM+EDLAYKNTVECITG IS+ ISTQGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTA
Sbjct:  334 ENGMSEDLAYKNTVECITGTISRTISTQGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTA 459          

HSP 2 Score: 51.9878 bits (123), Expect = 3.903e-69
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 3
Query:    3 DIFGERGILLGAVHGIVESLFRRFT 77
            DIFGERGILLGAVHGIVESLFRR+T
Sbjct:  309 DIFGERGILLGAVHGIVESLFRRYT 333          
BLAST of CK739690 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.440e-68
Identity = 108/126 (85.71%), Postives = 119/126 (94.44%), Query Frame = 1
Query:   79 ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTA 456
            E+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTA
Sbjct:  340 ESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTA 465          

HSP 2 Score: 50.0618 bits (118), Expect = 9.440e-68
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 3
Query:    3 DIFGERGILLGAVHGIVESLFRRFT 77
            DIFGERGILLGAVHGIVE LFRR+T
Sbjct:  315 DIFGERGILLGAVHGIVECLFRRYT 339          
BLAST of CK739690 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.464e-65
Identity = 105/126 (83.33%), Postives = 114/126 (90.48%), Query Frame = 1
Query:   79 ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTA 456
            E GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTA
Sbjct:  322 EQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTA 447          

HSP 2 Score: 50.8322 bits (120), Expect = 1.464e-65
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 3
Query:    3 DIFGERGILLGAVHGIVESLFRRFT 77
            DIFGERGILLGAVHGIVE+LFRR+T
Sbjct:  297 DIFGERGILLGAVHGIVEALFRRYT 321          
The following BLAST results are available for this feature:
BLAST of CK739690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILV5_PEA3.279e-7190.48Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH3.903e-6987.30Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL9.440e-6885.71Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_ORYSJ1.464e-6583.33Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6077 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739690 ID=CK739690; Name=CK739690; organism=Citrus sinensis; type=EST; length=457bp
GTGACATCTTTGGGGAGCGTGGCATTCTACTTGGTGCTGTTCATGGAATT
GTGGAATCCTTGTTTAGAAGGTTCACCTGAAAATGGAATGAATGAGGATC
TGGCTTACAAGAATACCGTGGAGTGCATAACAGGAATTATATCAAAGATC
ATCTCAACTCAGGGTATGTTGGCTGTCTACAATTCCTTCTCTGGAGAAGA
CAAAAAGGAATTCGAGAAAGCTTATAGTGCCTCATATTATCCGTGCATGG
AAATCTTATATGAGTGCTATGAAGATGTGGCCGCTGGCAGTGAGATCCGC
AGTGTTGTCTTGGCTGGACGTCGGTTTTATGAAAAGGAAGGTCTACCAGC
TTTCCCTATGGGAAAAATTGATCAGACTCGCATGTGGAAAGTTGGTGAGC
GAGTCCGATCAACACGTCCAGCAGGTGACTTAGGCCCATTACACCCATTC
ACAGCAG
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