CK739718

Overview
NameCK739718
Unique NameCK739718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739718 vs. ExPASy Swiss-Prot
Match: DEF19_ARATH (Defensin-like protein 19 OS=Arabidopsis thaliana GN=PDF1.4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  106 EAKVCQRRSKTWSGPCLNTGKCSRQCKQQEYARYGACYRQGAGYACYCYFNC 261
            E ++C+RRSKTW+G C NT  C  QCK+ E A +GAC+ Q  G+AC+CYFNC
Sbjct:   27 EGRICERRSKTWTGFCGNTRGCDSQCKRWERASHGACHAQFPGFACFCYFNC 78
[Close]
BLAST of CK739718 vs. ExPASy Swiss-Prot
Match: DEF1_DAHME (Defensin-like protein 1 OS=Dahlia merckii PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.262e-11
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  112 KVCQRRSKTWSGPCLNTGKCSRQCKQQEYARYGACYRQGAGYACYCYFNC 261
            ++C++ SKTWSG C NTG C  QCK  E A +GAC+ +   + C+CYFNC
Sbjct:    1 ELCEKASKTWSGNCGNTGHCDNQCKSWEGAAHGACHVRNGKHMCFCYFNC 50
[Close]
BLAST of CK739718 vs. ExPASy Swiss-Prot
Match: DEF1_CLITE (Defensin-like protein 1 OS=Clitoria ternatea PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  115 VCQRRSKTWSGPCLNTGKCSRQCKQQEYARYGACYRQGAGYACYCYFNC 261
            +C+R S TW+G C NTG C  QC+  E A++GAC+++G  + C+CYFNC
Sbjct:    2 LCERASLTWTGNCGNTGHCDTQCRNWESAKHGACHKRG-NWKCFCYFNC 49
The following BLAST results are available for this feature:
BLAST of CK739718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DEF19_ARATH6.051e-1457.69Defensin-like protein 19 OS=Arabidopsis thaliana G... [more]
DEF1_DAHME1.262e-1152.00Defensin-like protein 1 OS=Dahlia merckii PE=1 SV=... [more]
DEF1_CLITE8.179e-1151.02Defensin-like protein 1 OS=Clitoria ternatea PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6107 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739718 ID=CK739718; Name=CK739718; organism=Citrus sinensis; type=EST; length=529bp
AAAGCAAGTGCAAAAATGGCTAAGTCAGTTGCTAGCATTACCACAGCTTT
TGCTCTTATTTTTGCGTTCTTCATACTCTTTGCTTCCTTCGGAGTGCCAA
TGGCGGAAGCAAAAGTGTGCCAGCGGCGTAGCAAGACATGGTCGGGGCCG
TGTCTCAACACGGGGAAATGTAGCAGGCAGTGCAAGCAGCAGGAGTATGC
AAGGTACGGGGCTTGCTACAGACAAGGAGCTGGTTATGCGTGCTACTGTT
ACTTCAACTGCTAGTTGCTTATCAATGAAAGATATCCATCGTTAGCAGCG
AAAGCTAGCTGTGGCTACCTTAATTAATTTGCTGTCGTTCCTGTGATGTG
TCTCGTTTCAGTCGTCTTGTGTTTAGAACAATAACAAGCTACGTACGGTT
AGCCATACGTAGCTTCTGAATAACAAGCTATACCGTACGTAGCTTCTGAA
TAAGGAACGAGTCAATGTTTGTTGGGTCTTTGTTGGATTGCTTGTGTTGT
GCAATTCTCATATAATGAGCCACACTCTA
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