CK739737 | Citrus Genome Database

Overview


Name	CK739737
Unique Name	CK739737
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	449

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7096	contig	Csv1_Contig7096:528..975.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.088e-56
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            +FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 91.6633 bits (226), Expect = 4.088e-56
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 149
            SL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGS   +G
Sbjct:  149 SLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLG 197

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.619e-55
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            +FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 88.1965 bits (217), Expect = 2.619e-55
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS 134
            SLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGS
Sbjct:  130 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGS 173

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.034e-53
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            +FDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 85.8853 bits (211), Expect = 4.034e-53
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 149
            SL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGS   +G
Sbjct:  149 SLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLG 197

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.666e-51
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

HSP 2 Score: 80.1073 bits (196), Expect = 1.666e-51
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 149
            +LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +   +G
Sbjct:   35 NLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLG 83

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.375e-50
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

HSP 2 Score: 76.6406 bits (187), Expect = 1.375e-50
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSL*SIG 149
            +LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+   +G
Sbjct:  151 NLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLG 199

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.520e-49
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            +FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

HSP 2 Score: 75.8702 bits (185), Expect = 1.520e-49
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS 134
            SL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGS
Sbjct:    8 SLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGS 52

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.191e-41
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 348
            +FD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  196 SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267

HSP 2 Score: 78.5666 bits (192), Expect = 2.191e-41
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPG 128
            SL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYPG
Sbjct:  154 SLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPG 195

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.909e-40
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 1

Query:  136 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 348
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  194 FDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264

HSP 2 Score: 51.6026 bits (122), Expect = 8.909e-40
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGG 131
            +L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG
Sbjct:  149 NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGG 191

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.616e-38
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 1

Query:  136 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 348
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267

HSP 2 Score: 48.1358 bits (113), Expect = 3.616e-38
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGG 131
            +L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG
Sbjct:  152 NLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGG 194

[Close]

BLAST of CK739737 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 7.364e-37
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1

Query:  133 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 351
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 3

Query:    3 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSL*SIGFG**PGGF 173
            SLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+   +G    P  F
Sbjct:  150 SLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAF 206

The following BLAST results are available for this feature:

BLAST of CK739737 vs. ExPASy Swiss-Prot

BLAST of CK739737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
CB22_HORVU	4.088e-56	95.89	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_SOYBN	2.619e-55	95.89	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB23_APIGR	4.034e-53	91.78	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_PINSY	1.666e-51	94.52	Chlorophyll a-b binding protein type 2 member 2 (F...	[more]
CB21_PINTH	1.375e-50	94.52	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB21_RAPSA	1.520e-49	91.78	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB2_MALDO	2.191e-41	77.78	Chlorophyll a-b binding protein AB10, chloroplasti...	[more]
CB23_SOLLC	8.909e-40	88.73	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB23_HORVU	3.616e-38	87.32	Chlorophyll a-b binding protein of LHCII type III,...	[more]
CB21_ORYSJ	7.364e-37	100.00	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6126 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739737 ID=CK739737; Name=CK739737; organism=Citrus sinensis; type=EST; length=449bp
CAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTG
GTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGG
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGAC
CCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTG
ATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAAAAAAAAAAAAAA