CK739746

Overview
NameCK739746
Unique NameCK739746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:306..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.391e-44
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDENLLS IKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 5.735e-44
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LLSQIKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 9.783e-44
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF+ GKDLVVSV  AMGEEQINA+KD+G K
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.669e-43
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.179e-43
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDENLLSQIKDGF  GKDLVVSV  AMGEE+I +LKDIGPK
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.179e-43
Identity = 84/95 (88.42%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF+ GKDLVVSV  AMGEEQINA+KDIG K
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 8.281e-43
Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.413e-42
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCD+PHV RT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDE L++QIK+GFESGKDLVV+VQ AMGEEQI ALKD+GPK
Sbjct:   66 IFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.410e-42
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   65 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CK739746 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.196e-41
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    1 IFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 285
            IF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   65 IFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
The following BLAST results are available for this feature:
BLAST of CK739746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
IF5A3_SOLLC4.391e-4491.58Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLTU5.735e-4490.53Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_SOLLC9.783e-4488.42Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_NICPL1.669e-4390.53Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A_MANES2.179e-4390.53Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A3_SOLTU2.179e-4388.42Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_SENVE8.281e-4389.47Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MAIZE1.413e-4286.32Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A2_MEDSA2.410e-4287.37Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A5_SOLTU1.196e-4185.26Eukaryotic translation initiation factor 5A-5 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6135 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739746 ID=CK739746; Name=CK739746; organism=Citrus sinensis; type=EST; length=477bp
ATCTTCAATGGCAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAACTG
TGATGTTCCTCATGTCACTCGCACTGACTACCAGCTGATTGATATCTCTG
AGGATGGATTTGTTAGCCTGCTGACTGAGAATGGCAATACCAAGGATGAC
CTGAGACTTCCAACTGATGAAAATCTGCTTTCACAGATCAAGGATGGATT
TGAGAGTGGGAAAGATCTGGTTGTCTCAGTTCAGTGTGCTATGGGAGAGG
AGCAGATCAATGCCCTGAAGGACATTGGCCCCAAGTAAAAGACTTTTGCT
TGATCGAGAATGCAGATTGCTGAAAGCTGTGGGAAGGTGGATAGTAGTGT
AGCTTTACTGGTGTCCGGTTTCAAGATGAATGCCATCATTTCATATAAAA
TGACTCTTACCATATTATTAATTGGTTTCTATCGACAGTATTTTTATTCT
GTTTGATTGCTTGAAAGTTGAAACATG
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