CK739761

Overview
NameCK739761
Unique NameCK739761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13417 contig Csv1_Contig13417:498..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739761 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 56/170 (32.94%), Postives = 85/170 (50.00%), Query Frame = 3
Query:    6 LLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAG-TIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMGAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 497
            L+++ +  + YY+ L  + VG   + I P A   N   G G  IIDSGT  T  V  AY +VR  F  ++   +   S  GFD C+  P     +  PT  + F G ++ LP +N  I S +  + CLAMG++       +++  N+QQQN  ++YD  NS +  A   C
Sbjct:  270 LIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFI-SPSNGLICLAMGSSSQG----MSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434          
BLAST of CK739761 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.053e-15
Identity = 53/169 (31.36%), Postives = 78/169 (46.15%), Query Frame = 3
Query:    6 LLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMGAAPDNVNSVLNVIANMQQQNHRILYDVPNSRLGVARELC 497
            L+ +    + YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F  ++       S  G  TC+  P     +  P I++ F G  + L + N+LI S A  + CLAMG++       +++  N+QQQ  ++LYD+ N  +      C
Sbjct:  271 LIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILI-SPAEGVICLAMGSSS---QLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435          
The following BLAST results are available for this feature:
BLAST of CK739761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR1.736e-1832.94Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR1.053e-1531.36Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6151 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739761 ID=CK739761; Name=CK739761; organism=Citrus sinensis; type=EST; length=522bp
CACCATTGCTTAAAAACCCAAGAAGATCATCACTTTACTATGTTAATTTG
TTGGCCATTAGGGTTGGCAGAAGAGTTGTTGATATCCCACCTGGTGCCTT
ACAGTTCAATCCCACAACCGGCGCTGGCACTATTATTGATTCTGGCACAG
TTTTTACCAGACTGGTGGCGCCAGCTTACACCGCAGTGAGAGACGTGTTC
CGTAGACGCGTAGGGAGTAACTTAACAGTGACATCCCTAGGCGGATTCGA
CACGTGCTACTCGGTCCCAATCGTTGCACCGACAATCACGTTGATGTTCT
CAGGCATGAACGTGACTCTACCACAAGACAACCTTCTAATCCACAGCACT
GCAGGGAGCATCACATGCTTGGCCATGGGTGCAGCTCCAGACAACGTCAA
CTCAGTGCTTAATGTCATTGCCAATATGCAGCAACAAAACCACAGAATCC
TCTATGATGTGCCCAATTCAAGGCTCGGTGTCGCCCGTGAGCTTTGCACT
TAGATATAGAATTGGGAGATAA
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