CK739818

Overview
NameCK739818
Unique NameCK739818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739818 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.471e-22
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:    2 PPAMIPPQPGFGYQQQLVPGMRPGGGPMQNFFVPIXXXXXXXXXXXXXXXXXMQQNQQHVPMMQPQMLPRGRVYRYPSGR-GMPDVSMPGVGGMLPYSI 295
            PPAMIPPQPG+GYQQQLVPGMRPGGGP+ +FF+P+                 +Q +QQ  PMMQ QM PRGR++RYP GR G  DV    +G  +P +I
Sbjct:  443 PPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPM-VQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTI 540
The following BLAST results are available for this feature:
BLAST of CK739818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PABP2_ARATH2.471e-2253.54Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6208 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739818 ID=CK739818; Name=CK739818; organism=Citrus sinensis; type=EST; length=337bp
CCCGCCTGCTATGATTCCTCCTCAGCCTGGATTTGGTTATCAGCAGCAGC
TTGTTCCTGGTATGAGGCCAGGTGGGGGTCCCATGCAAAATTTCTTTGTG
CCGATAGCTCAGCCAGGGCAGCAGGGTCAGCGTCCTAGTGGCAGACGGGC
AGCAGGCATGCAGCAGAACCAGCAGCATGTTCCAATGATGCAGCCACAGA
TGCTTCCAAGGGGGCGTGTCTACCGCTACCCGTCAGGCCGTGGCATGCCA
GATGTTTCCATGCCTGGTGTCGGAGGGATGCTACCCTATTCCATATGGTG
ACATGGCTGCTATGCCGCTGCGTGATGCCCCTATTAC
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