CK739840

Overview
NameCK739840
Unique NameCK739840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2086 contig Csv1_Contig2086:324..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739840 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.499e-51
Identity = 98/116 (84.48%), Postives = 107/116 (92.24%), Query Frame = 1
Query:    1 KLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 348
            KL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   45 KLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of CK739840 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.207e-46
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 1
Query:    4 LATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 345
            L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   56 LSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of CK739840 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.834e-42
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   43 KAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 348
            +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:   43 RAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of CK739840 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.255e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   55 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 333
            +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of CK739840 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.043e-13
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:   49 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 165
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of CK739840 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   43 KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 321
            KA L   +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of CK739840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH1.499e-5184.48Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL7.207e-4682.46Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU4.834e-4281.37Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU4.255e-2252.69Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA8.043e-1392.31Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE3.992e-1241.05Photosystem I reaction center subunit V, chloropla... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6230 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739840 ID=CK739840; Name=CK739840; organism=Citrus sinensis; type=EST; length=409bp
AAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGCTGA
GCTGAGCACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCT
TGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAACAA
GGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATGTTCG
TGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGCTTTA
ACATTGTTGATGTTCTTGCTTGGGGTTCCATTGGCCATATTGTCGCTTAC
TACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGGTTG
ATTTTGTTATTTGTACTGACTCTCTTTGTCTCTTTTAGTTTCTTAATTTC
TCAAGTGTT
back to top