CK739856

Overview
NameCK739856
Unique NameCK739856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1431 contig Csv1_Contig1431:1..408. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29
Identity = 60/91 (65.93%), Postives = 80/91 (87.91%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 273
            LE +L S+ +V DAAV+P+PDE+AG++PMAF+VR+P S+LNEA+I++FVA+QV+PYKK+RRVAFINAIPK+ AGKILR EL K+AV   +S
Sbjct:  470 LEQILHSNPDVIDAAVVPFPDEDAGEIPMAFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRRELTKIAVDGNAS 560          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29
Identity = 59/91 (64.84%), Postives = 78/91 (85.71%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGSS 273
            LEH+L SH  +ADAAVIPYPDEEAG++PMAF+VRQP S++ + ++M++VA+QV+PYKK+RRVAF+ AIPKS AGKILR EL + A+  G+S
Sbjct:  450 LEHILQSHPGIADAAVIPYPDEEAGELPMAFIVRQPGSNITKEQVMDYVAKQVAPYKKVRRVAFVTAIPKSPAGKILRRELVQQALSMGAS 540          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 5.189e-28
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAVPSGS 270
            LEH+L S  E+ADAAV+PYPDEEAGQ+PMAFVVRQP + L E ++M  VA+ V+PYKK+RRVAF+NAIPKS AGKILR EL   A+ S S
Sbjct:  507 LEHILQSRPEIADAAVVPYPDEEAGQLPMAFVVRQPGAYLTEQQVMNCVAKHVAPYKKVRRVAFVNAIPKSPAGKILRRELVLQAMASTS 596          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL5_ARATH (4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.284e-26
Identity = 55/85 (64.71%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 255
            LE LLL+H E+ DAAVIP+PD+E GQ PMA+VVR+  SSL+E  IMEFVA+QV+PYK+IR+VAF+++IPK+ +GKILR +L K+A
Sbjct:  456 LEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKIA 540          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL7_ARATH (4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.413e-25
Identity = 52/81 (64.20%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMEL 243
            LE LL+SH ++ DA VIP+PDEEAG++P+AFVVR P+SS+ E +I +F+A+QV+PYK++RRV+FI+ +PKSAAGKILR EL
Sbjct:  456 LEGLLVSHPDILDAVVIPFPDEEAGEVPIAFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRREL 536          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.413e-25
Identity = 54/85 (63.53%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 255
            LE LLL+H EV D AVIP+PD E GQ PMA++VR+  S+L+E E+MEFVA+QV+PYKK+R+VAF+  IPK+A+GKILR +L K+A
Sbjct:  464 LEALLLTHPEVTDVAVIPFPDREVGQFPMAYIVRKKGSNLSEREVMEFVAKQVAPYKKVRKVAFVTDIPKNASGKILRKDLIKLA 548          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.196e-24
Identity = 50/85 (58.82%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 255
            LE LL++H ++ DAAVIP+PD+EAGQ PMA+VVR+  S+L+E ++++F+++QV+PYKKIR+V+FIN+IPK+A+GK LR +L K+A
Sbjct:  462 LEALLITHPDILDAAVIPFPDKEAGQYPMAYVVRKHESNLSEKQVIDFISKQVAPYKKIRKVSFINSIPKTASGKTLRKDLIKLA 546          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.562e-24
Identity = 55/84 (65.48%), Postives = 71/84 (84.52%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKV 252
            LE LLL+H E+ADAAVIP PD +AGQ PMA++VR+  S+L+E+EIM FVA+QVSPYKKIR+V F+ +IPK+ +GKILR EL K+
Sbjct:  477 LEALLLAHPEIADAAVIPIPDMKAGQYPMAYIVRKVGSNLSESEIMGFVAKQVSPYKKIRKVTFLASIPKNPSGKILRRELTKL 560          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.041e-24
Identity = 50/85 (58.82%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVA 255
            LE LL++H  + DAAVIP+PD EAGQ PMA+V R+P S+L+E E+++F++ QV+PYKKIR+VAFI++IPK+A+GK LR +L K++
Sbjct:  464 LEALLIAHPHILDAAVIPFPDREAGQYPMAYVARKPESNLSEKEVIDFISNQVAPYKKIRKVAFISSIPKTASGKTLRKDLIKLS 548          
BLAST of CK739856 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.665e-24
Identity = 50/86 (58.14%), Postives = 73/86 (84.88%), Query Frame = 1
Query:    1 LEHLLLSHREVADAAVIPYPDEEAGQMPMAFVVRQPHSSLNEAEIMEFVARQVSPYKKIRRVAFINAIPKSAAGKILRMELRKVAV 258
            LE LLL+H ++ DAAVIP+PD+EAGQ PMA+V R+P S+L E ++++F+++QV+PYKKIR+VAFI++IPK+ +GK LR +L K A+
Sbjct:  462 LEALLLNHPDILDAAVIPFPDKEAGQFPMAYVARKPESNLCEKKVIDFISKQVAPYKKIRKVAFIDSIPKTPSGKTLRKDLIKFAI 547          
The following BLAST results are available for this feature:
BLAST of CK739856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
4CLL9_ARATH2.107e-2965.934-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
4CLL5_ORYSJ2.751e-2964.844-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]
4CLL6_ORYSJ5.189e-2867.784-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
4CLL5_ARATH8.284e-2664.714-coumarate--CoA ligase-like 5 OS=Arabidopsis thal... [more]
4CLL7_ARATH1.413e-2564.204-coumarate--CoA ligase-like 7 OS=Arabidopsis thal... [more]
4CLL4_ORYSJ1.413e-2563.534-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CLL4_ARATH1.196e-2458.824-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
4CLL2_ARATH1.562e-2465.484-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]
4CLL3_ARATH2.041e-2458.824-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
4CLL8_ARATH2.665e-2458.144-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6247 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739856 ID=CK739856; Name=CK739856; organism=Citrus sinensis; type=EST; length=408bp
CTAGAACACTTGCTTCTGTCCCATCGGGAGGTTGCTGATGCTGCAGTTAT
TCCATATCCTGATGAAGAAGCTGGTCAGATGCCCATGGCTTTTGTGGTAA
GGCAGCCGCACAGCAGTCTCAACGAAGCAGAAATAATGGAATTTGTGGCA
AGACAGGTGTCACCGTACAAGAAAATAAGGCGCGTAGCTTTCATCAATGC
TATACCTAAAAGTGCTGCTGGCAAAATATTGAGGATGGAGTTGAGGAAGG
TTGCTGTTCCATCTGGGTCTTCTTGTAGATTGTGATCTTTATAATGGCTG
TATACTTTAGCTTGTTTCCAATGTGAATTTCAGTGTAACTTTTTATTTTA
TTTATAAGAGGACATGCAAGGGGCAAATTTTGAAGTGTAAAAAAAAAAAA
AAAAAAAA
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