CK739858

Overview
NameCK739858
Unique NameCK739858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10954 contig Csv1_Contig10954:373..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.569e-24
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DCGQL
Sbjct:  134 VVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQL 171          

HSP 2 Score: 62.3882 bits (150), Expect = 3.569e-24
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGP TNGSQFF+CTAKTEWLDGK
Sbjct:  103 GILSMANAGPNTNGSQFFICTAKTEWLDGK 132          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.332e-23
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEGMDV+K  E VGSSSGR +KPVVIADCGQL
Sbjct:  134 VVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          

HSP 2 Score: 62.7734 bits (151), Expect = 1.332e-23
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAGPGTNGSQFF+CTAKTEWL+GK
Sbjct:  103 GILSMANAGPGTNGSQFFICTAKTEWLNGK 132          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.260e-23
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEGMDVV+AIEKVGS SG+T KPV IADCGQL
Sbjct:  112 VVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQL 149          

HSP 2 Score: 60.077 bits (144), Expect = 2.260e-23
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGPGTNGSQFF+CT KT WLDGK
Sbjct:   81 GVLSMANAGPGTNGSQFFICTEKTAWLDGK 110          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.416e-23
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEG+DVVKAIEKVGSSSG+  KPVV+ADCGQL
Sbjct:  134 VVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQL 171          

HSP 2 Score: 56.6102 bits (135), Expect = 8.416e-23
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG  TNGSQFF+CT KT+WLDGK
Sbjct:  103 GILSMANAGANTNGSQFFICTVKTDWLDGK 132          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.138e-22
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEG+DVVKAIEK+GSSSG+  KPVVIADCG++
Sbjct:  135 VVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEI 172          

HSP 2 Score: 56.6102 bits (135), Expect = 3.138e-22
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG  TNGSQFF+CT KT+WLDGK
Sbjct:  104 GILSMANAGANTNGSQFFICTVKTDWLDGK 133          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.522e-21
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG+V+EGM+VV+ IEKVGS SG+T++PV IADCGQL
Sbjct:  134 VVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQL 171          

HSP 2 Score: 59.6918 bits (143), Expect = 1.522e-21
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG GTNGSQFF+CT KTEWLDGK
Sbjct:  103 GILSMANAGAGTNGSQFFICTEKTEWLDGK 132          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.981e-21
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEG++VV+ IEKVGS SGRT+KPVVIADCGQ+
Sbjct:  135 VVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQI 172          

HSP 2 Score: 55.4546 bits (132), Expect = 1.981e-21
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS ANAG  TNGSQFF+CT KT WLDGK
Sbjct:  104 GILSMANAGANTNGSQFFICTEKTSWLDGK 133          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.673e-21
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVV+G+DVVKAIEKVGS SG+T+K V I DCGQL
Sbjct:  134 VVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQL 171          

HSP 2 Score: 56.9954 bits (136), Expect = 5.673e-21
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            GILS AN+GP TNGSQFF+CT KT WLDGK
Sbjct:  103 GILSMANSGPNTNGSQFFICTDKTSWLDGK 132          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.113e-20
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFGQVVEGMDVVKAIEKVG+ +G T+K V +ADCGQL
Sbjct:  134 VVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQL 171          

HSP 2 Score: 55.8398 bits (133), Expect = 2.113e-20
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT  T WLDGK
Sbjct:  103 GVLSMANAGPNTNGSQFFICTVATPWLDGK 132          
BLAST of CK739858 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.564e-20
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 GILSTANAGPGTNGSQFFVCTAKTEWLDGK 90
            G+LS ANAGP TNGSQFF+CT KT+WLDGK
Sbjct:  138 GVLSMANAGPNTNGSQFFICTIKTDWLDGK 167          

HSP 2 Score: 58.5362 bits (140), Expect = 3.564e-20
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 2
Query:   95 VVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 208
            VVFG V EGMDVVK IE  GS SGRT+K +VI DCGQL
Sbjct:  169 VVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 206          
The following BLAST results are available for this feature:
BLAST of CK739858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
CYPH_CATRO3.569e-2489.47Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC1.332e-2384.21Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_ALLCE2.260e-2386.84Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CP18C_ARATH8.416e-2386.84Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP19B_ARATH3.138e-2281.58Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CYPH_LUPLU1.522e-2173.68Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH1.981e-2181.58Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP18D_ARATH5.673e-2178.95Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_MAIZE2.113e-2078.95Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIF_HUMAN3.564e-2080.00Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6249 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739858 ID=CK739858; Name=CK739858; organism=Citrus sinensis; type=EST; length=248bp
GGAATCCTCTCCACGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTT
CTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACCGTTGTG
TTCGGTCAAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGT
GGGGTCCAGCTCCGGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCG
GTCAATTGTGTTAGATTTGATCATGATAATGATCGGCATATCACCAGC
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