CK739873

Overview
NameCK739873
Unique NameCK739873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.172e-58
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  203 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 2.172e-58
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  203 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 1.078e-57
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+
Sbjct:  194 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 301
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.078e-57
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTRE
Sbjct:  200 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 307
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 6.986e-57
Identity = 105/108 (97.22%), Postives = 106/108 (98.15%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  190 AKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 297
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.192e-56
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  203 AKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.192e-56
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  203 AKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 2.655e-56
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 306
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 4.528e-56
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+
Sbjct:  193 AKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 300
[Close]
BLAST of CK739873 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.009e-55
Identity = 102/108 (94.44%), Postives = 106/108 (98.15%), Query Frame = 2 
Query:    2 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 325
            AKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct:  202 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 309
The following BLAST results are available for this feature:
BLAST of CK739873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA2_LARTR2.172e-5899.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.172e-5899.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.078e-5797.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.078e-5797.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU6.986e-5797.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.192e-5696.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.192e-5696.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.655e-5695.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU4.528e-5694.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.009e-5594.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6265 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739873 ID=CK739873; Name=CK739873; organism=Citrus sinensis; type=EST; length=327bp
CGCAAAATTAATTAGGCAAAGGTATCGTGAAGCAGCAGACATCATCAAAA
AGGGAAAGATGTGCTGCCTTTTCATCAATGATCTTGATGCAGGAGCCGGT
AGGATGGGTGGGACTACCCAATACACAGTCAACAATCAAATGGTGAATGC
CACCCTCATGAACATTGCTGACAACCCAACCAACGTCCAGCTCCCTGGTA
TGTACAACCAGGAAGAGAATCCCCGTGTTCCCATTATAGTCACTGGTAAT
GACTTCTCCACGTTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAAAA
GTTTTACTGGGCCCCTACTCGGGAAGA
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