CK739877

Overview
NameCK739877
Unique NameCK739877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.086e-25
Identity = 58/66 (87.88%), Postives = 58/66 (87.88%), Query Frame = 3
Query:   78 MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK L I
Sbjct:    1 MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKI 66          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.028e-24
Identity = 57/65 (87.69%), Postives = 57/65 (87.69%), Query Frame = 3
Query:   81 AYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            AY  MKP K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK L I
Sbjct:    4 AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKI 68          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 3
Query:   78 MAYAA-MKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTK LHI
Sbjct:    6 VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHI 72          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_RAT (40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_PONAB (40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_PIG (40S ribosomal protein S20 OS=Sus scrofa GN=RPS20 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
BLAST of CK739877 vs. ExPASy Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.935e-15
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   90 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKGLHI 275
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L I
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63          
The following BLAST results are available for this feature:
BLAST of CK739877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RS202_ARATH4.086e-2587.8840S ribosomal protein S20-2 OS=Arabidopsis thalian... [more]
RS201_ARATH2.028e-2487.6940S ribosomal protein S20-1 OS=Arabidopsis thalian... [more]
RS20_ORYSJ7.464e-1973.1340S ribosomal protein S20 OS=Oryza sativa subsp. j... [more]
RS20_RAT2.935e-1564.5240S ribosomal protein S20 OS=Rattus norvegicus GN=... [more]
RS20_PONAB2.935e-1564.5240S ribosomal protein S20 OS=Pongo abelii GN=RPS20... [more]
RS20_PIG2.935e-1564.5240S ribosomal protein S20 OS=Sus scrofa GN=RPS20 P... [more]
RS20_MOUSE2.935e-1564.5240S ribosomal protein S20 OS=Mus musculus GN=Rps20... [more]
RS20_MACFA2.935e-1564.5240S ribosomal protein S20 OS=Macaca fascicularis G... [more]
RS20_HUMAN2.935e-1564.5240S ribosomal protein S20 OS=Homo sapiens GN=RPS20... [more]
RS20_BOVIN2.935e-1564.5240S ribosomal protein S20 OS=Bos taurus GN=RPS20 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6269 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739877 ID=CK739877; Name=CK739877; organism=Citrus sinensis; type=EST; length=275bp
CAGCAACTGCAGCAGCAGCTCTCACTCTTCCGGTCTCTCGAAATCCTATA
AGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTATGCAGCAATGAAGCC
CACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGATTCATAAGATCAGAA
TCACACTTTCCTCCAAGAATGTTAAAAATCTTGAGAAAGTCTGTACGGAT
TTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGTCAAGGGTCCAGTGAG
GATGCCTACCAAGGGTCTTCACATC
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