CK739955

Overview
NameCK739955
Unique NameCK739955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739955_ssr189 microsatellite CK739955_ssr189:189..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2833 contig Csv1_Contig2833:42..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739955 vs. ExPASy Swiss-Prot
Match: C19L2_MOUSE (CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  255 GRAD-DEYDFEEGPSRKS--RKNRGANDNKGAERAIA--RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLE 626
            G++D D Y  ++    K+  +++ G  +     RAIA  + +  +  +CL+CF++   P+HL+VAI    YL LP +QS+  GHC I+ +QH  A   +D  VW+EI+ F+K L+ MF  +E + +FLE
Sbjct:  620 GKSDEDNYTLDDMFVSKAAEKEHLGKKEESQRRRAIAEHQSLAAKMAKCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLTEGHCFIVPLQHHQAATVLDEDVWEEIQMFRKSLVKMFEDKELDCIFLE 748          
BLAST of CK739955 vs. ExPASy Swiss-Prot
Match: C19L2_HUMAN (CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  306 RKNRGANDNKGAERAIA--RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLE 626
            R+  G  +    ++AIA  R +  Q E+CL+CF++   P+HL+VAI    YL LP  +S+  GHC I+ +QH  A   +D  +W+EI+ F+K L+ MF  +  + +FLE
Sbjct:  643 RERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLE 751          
BLAST of CK739955 vs. ExPASy Swiss-Prot
Match: C19L2_DANRE (CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.493e-17
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 3
Query:  255 GRAD-DEYDFEEG--PSRKSRKNRGANDNKGAERAI--ARCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLE 626
            GR D D Y  ++    S   ++  G ++ +   +A+   R +  + E+C  CF++   P+HL++A+    YL LP   S+  GHC I+ VQH  A   +D  +W EI+ F++ L+ MF  QE + VFLE
Sbjct:  694 GRTDGDNYTLDDMFVSSAAQKERAGRDEERQRNKAVQETRRLAGRMEKCPHCFDSAELPKHLIIAVGTKVYLCLPNSVSLTEGHCLIVPVQHHTAATGLDEDIWGEIQMFRRALVRMFESQELDCVFLE 822          
BLAST of CK739955 vs. ExPASy Swiss-Prot
Match: C19L2_XENTR (CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.847e-16
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  267 DEYDFEEGPSRKSRKNRGANDNKGAERAIA----RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLE 626
            D Y  ++    K+ K    +  +  ER  A    R +    E+C FCF+N   P+HL+VAI    YL LP   S+  GHC I+ +QH  A+  +D  +++EI+ F+K L+ MF  +  + VFLE
Sbjct:  663 DYYTLDDMFVTKAAKKEHTDKEEERERMQAMHEHRSLTATMEKCRFCFDNAELPKHLIVAIGTKVYLCLPNHLSLTEGHCLIVPLQHHTASTLLDEDIYNEIQVFRKALVRMFESKGLDCVFLE 786          
BLAST of CK739955 vs. ExPASy Swiss-Prot
Match: C19L2_DROME (CWF19-like protein 2 homolog OS=Drosophila melanogaster GN=CG9213 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  234 NKQYS--ISGRADDEYDFEEGPSRKSRKNRGANDNKGAERAIA----RCIMTQQERCLFCFENPNRPRHLVVAIANFTYLVLPQWQSVVPGHCCILSVQHELATRTVDSHVWDEIRNFKKCLIMMFAKQEKELVFLE 626
            N QY+  +S   +   D ++  + K RK   A+D +  E   A      ++   + C  CF++    + L+V++ +  YL LP +  +  GHC + ++QH      +D   W+EI NF+K L  MFA + +++VF E
Sbjct:  417 NLQYADIVSKHKNPNDDLDDIFADKVRKQISASDAEKREMQSAIREHEKLVATLDNCERCFDSAKLDKQLLVSLGDKIYLSLPWYMGLQSGHCILTTLQHVPCCTQLDEDAWEEISNFRKALTRMFAARRQDVVFYE 553          
The following BLAST results are available for this feature:
BLAST of CK739955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C19L2_MOUSE3.042e-1836.43CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE... [more]
C19L2_HUMAN8.851e-1838.53CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE... [more]
C19L2_DANRE7.493e-1734.11CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=... [more]
C19L2_XENTR2.847e-1635.48CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf1... [more]
C19L2_DROME1.617e-1129.20CWF19-like protein 2 homolog OS=Drosophila melanog... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6777 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739955 ID=CK739955; Name=CK739955; organism=Citrus sinensis; type=EST; length=685bp
CTAAAATCTCGAAGAGCTGTCCTGTCTTAACTCAAATTGGGAACAGAACA
GCCTCTGGTCTTCAGTTTCAGCAAGAAGTTGAGAAAATGAAGGCAAAGCA
GGGTGCGGCTGATAATTCTACTAAACATCAAGATGTTGGAAGCTTGGGCA
GGCATGTTATTTATGATTTGTATGTTCGAAAAAGGAAGGATGATGATGAT
GCTGATAGGAATCTAGCCCAAAAGATAATGCATAATAAACAATACAGTAT
ATCTGGTCGGGCCGATGATGAATATGATTTTGAAGAAGGTCCAAGTCGAA
AGTCCCGGAAGAATAGAGGAGCAAATGATAATAAGGGTGCTGAAAGAGCT
ATTGCGAGATGTATCATGACTCAACAAGAGCGCTGCCTGTTTTGCTTTGA
GAATCCAAACCGGCCAAGACACCTTGTTGTGGCAATAGCAAATTTTACTT
ATTTGGTGTTGCCACAGTGGCAGTCTGTCGTGCCTGGTCATTGCTGCATC
TTGTCAGTGCAGCATGAGTTGGCGACTAGAACCGTTGACAGTCATGTGTG
GGATGAAATTCGTAACTTCAAGAAATGCCTTATCATGATGTTTGCCAAGC
AAGAGAAGGAATTAGTGTTTCTCGAACAGTGATGGGTTTGGGACAACAGC
GTCCCACTTGTTTGATTGAGTGCATTCCGTTGCCC
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