CK739970

Overview
NameCK739970
Unique NameCK739970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1434 contig Csv1_Contig1434:1..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739970 vs. ExPASy Swiss-Prot
Match: Y1342_ARATH (PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.846e-40
Identity = 74/151 (49.01%), Postives = 101/151 (66.89%), Query Frame = 3 
Query:    3 SSAFQDVYLVFRRFQAEELLGYSGVDDSTQVKLLLGAAESVRVRGRCPGKNGLSKYRMERGIERWTVDCICGAKDDDGERMFACDVCGVWQHTRCSGIHDSDAVPARFVCCRC--------------RGTEQMSKPSGFCKDENTSTDDNS 413
            + AFQ+VY +F+RF+ EELLGY  +DDS  +K L+G    +R++GRC  K+GL +YRMERG++ W VDC CG KDDDGERM ACD CGVW HTRC GI+++DA+P++F+C RC              RG+ Q+ K    C+ E+ +    S
Sbjct:  539 AKAFQEVYAMFKRFEVEELLGYGSIDDSITLKFLVGTNGVIRIKGRC-SKHGLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELYSKKPKQSKKERGSSQVPKAGFVCRGESAAMGSGS 688
The following BLAST results are available for this feature:
BLAST of CK739970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1342_ARATH5.846e-4049.01PHD finger protein At1g33420 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6792 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739970 ID=CK739970; Name=CK739970; organism=Citrus sinensis; type=EST; length=573bp
CATCAAGTGCTTTCCAAGATGTATATTTAGTATTTAGAAGATTTCAGGCC
GAAGAGCTTCTTGGCTATAGTGGTGTAGATGATTCCACCCAGGTTAAACT
CTTACTAGGGGCCGCAGAATCAGTTCGAGTTCGAGGGAGATGCCCAGGGA
AAAATGGGCTTAGCAAATACAGAATGGAGAGAGGCATTGAGAGATGGACG
GTGGATTGCATCTGTGGAGCTAAGGATGATGATGGGGAAAGAATGTTTGC
TTGCGATGTGTGCGGGGTGTGGCAGCACACAAGATGTTCTGGCATTCATG
ATTCCGATGCAGTTCCAGCTAGGTTTGTTTGCTGCAGATGCAGAGGCACT
GAACAAATGTCTAAACCCAGTGGGTTCTGCAAAGATGAGAATACTTCCAC
TGACGATAATAGCTGCTTTGGGAAGAGCTTGGCAACACCTTTTAAAGTTC
GGTGAGAATTTTAACTGCTGTACATGTGTTCTCTCTTTGTCTAGGAGAGG
ATTCATAGGGCCTAAATGGACTGTGTACATAAGAAGAAACAGGCTCAAAT
TTGTTTCGGGCCGTTGTCTCTCC
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