CK739980

Overview
NameCK739980
Unique NameCK739980
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739980_ssr266 microsatellite CK739980_ssr266:266..277. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13671 contig Csv1_Contig13671:3..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK739980 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.827e-24
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:    3 ARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRVQKNGGFVDAATGRKSDVLIQIPNGPRT--DPSQAV 239
            ARPIRRW+EK+VVT+LS+ML++EEIDEN TVYIDA+P  D L YRV   GG V+A TG+KSD+LIQ+PNG  T  D +QAV
Sbjct:  817 ARPIRRWIEKRVVTQLSKMLIQEEIDENCTVYIDAAPHKDELAYRVDNRGGLVNAETGQKSDILIQVPNGAATGSDAAQAV 897
[Close]
BLAST of CK739980 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:    3 ARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRVQKNGGFVDAATGRKSDVLIQIPNGP-RTDPSQAV 239
            ARPIRRW+EKKVVTELS+M+VREEIDENSTVYIDA     +LVYRV+ +GG VDA+TG+KSDVLI I NGP R+D +QAV
Sbjct:  816 ARPIRRWMEKKVVTELSKMVVREEIDENSTVYIDAG--AGDLVYRVE-SGGLVDASTGKKSDVLIHIANGPKRSDAAQAV 892
The following BLAST results are available for this feature:
BLAST of CK739980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HS101_ORYSJ1.827e-2466.67Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
HS101_ARATH1.547e-2373.75Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6802 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739980 ID=CK739980; Name=CK739980; organism=Citrus sinensis; type=EST; length=493bp
GTGCAAGGCCTATTCGGCGATGGCTGGAGAAAAAGGTAGTGACTGAGCTA
TCAAGAATGCTTGTTCGCGAAGAAATTGACGAGAACTCAACAGTGTACAT
AGACGCCAGTCCAAAGGGCGATAATTTGGTGTACCGGGTTCAGAAAAATG
GAGGGTTTGTGGACGCAGCTACTGGGCGGAAATCTGATGTATTAATTCAA
ATCCCCAATGGCCCGCGGACTGATCCGTCGCAGGCTGTGAAGAAGATGAA
GATCGAAGAAATTGTTGATGATGATGAGATGGTTGACGATTGAACTGACA
ATTCACAAGTGTTTGAAGAGTTTGTGTTGGAGTCTGAAGGTTTTATTTTG
TAATTTGCTGAATTTTATTTTGTTTCCAACTGTGAAAATGTTAATAGGTG
GAGGGTATCTTCTCTTGTTATGTTTGTAAAATGTGAAAACGTTAAGGGAC
CTTCCCTTTGTCTTGGGATTTGTTTTTAATCGAAATAAATATC
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