CK739994

Overview
NameCK739994
Unique NameCK739994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739994 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 3 
Query:  168 REIFNKMKEKVLXXXXXXXXXXXXXXX--------HVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAI 362
            REI +KMKE V                         +THG+HLVKGKA H MEDYVVA+FK+VD+NELGLFAI
Sbjct:    4 REILHKMKESVKEKVGLGASASSADSGKGKSKMLKQITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAI 76
[Close]
BLAST of CK739994 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 3 
Query:  156 MIGKREIFNKMKEKVLXXXXXXXXXXXXXXX-----HVTHGYHLVKGKAGHPMEDYVVAQFKQVDENELGLFAI 362
            M GK EI++KMK+KV                      V HGYHLVKGK+ HPMEDY+VA+++Q  E++LGLFAI
Sbjct:    1 MAGK-EIYHKMKDKVKDAFSSSGPETGKGKTKLSGKRVKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAI 73
The following BLAST results are available for this feature:
BLAST of CK739994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
P2C39_ARATH6.778e-1252.05Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C62_ORYSJ9.787e-1148.65Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6488 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739994 ID=CK739994; Name=CK739994; organism=Citrus sinensis; type=EST; length=364bp
CGTCATTGTACAGCGAAGAACGCGGCAAAAGTCGTCGTGTCAACCGTTAA
AGGATCCTCATCTTCTTCGCTCCCTCCTTCGCCACTGTGTCTGTGTTTAT
CCCCATTATTTCAATTACACACCTCGTATTAAGAAATACAGAAGCAGCAA
AAGCCATGATCGGTAAGAGAGAAATCTTCAATAAGATGAAGGAGAAAGTA
TTGGGCTCATCTCCTGATTCTGGAAAAGGAAAGAGTAAGATGAAAAAGCA
TGTAACTCATGGCTACCACTTAGTAAAGGGAAAGGCGGGTCATCCCATGG
AAGATTATGTCGTTGCGCAGTTTAAGCAAGTTGATGAGAATGAATTGGGT
TTATTTGCCATATT
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