CK740015

Overview
NameCK740015
Unique NameCK740015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740015_ssr252 microsatellite CK740015_ssr252:252..263. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1944 contig Csv1_Contig1944:128..430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740015 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.316e-23
Identity = 61/101 (60.40%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDE 303
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQ 108          
BLAST of CK740015 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.761e-19
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDE 303
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQ 107          
BLAST of CK740015 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.838e-15
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKV 249
            GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKV 82          
BLAST of CK740015 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.106e-13
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   22 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDE 303
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDE 107          
The following BLAST results are available for this feature:
BLAST of CK740015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSBQ_SPIOL1.316e-2360.40Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_ARATH9.761e-1955.34Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH3.838e-1563.10Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI2.106e-1348.08Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6509 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740015 ID=CK740015; Name=CK740015; organism=Citrus sinensis; type=EST; length=303bp
GGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTAGCTCCCA
GCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGAGTTGCTG
TGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAACGAGCCT
GAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTGTGGCCTC
AGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATCAAAGTTG
GTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAACTCTGAT
GAG
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