CK740023

Overview
NameCK740023
Unique NameCK740023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740023 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAALVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 249
            GGRAPE + +N+  + + RK  + GK +ASICHG  IL +A V++GRK T+YP +K  +I AG  W++ E     VVDGN ++
Sbjct:   69 GGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAEV----VVDGNWVS 147          
BLAST of CK740023 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAALVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 249
            GGRAPE + +N+  +++ +K  + GK +ASICHG  IL +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++
Sbjct:   69 GGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQILISAGVLRGRRGTSYPGIKDDMINAGVDWVDAEV----VVDGNWVS 147          
BLAST of CK740023 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAALVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATSEGHP--------EFIRL 288
            GGRAPE + +N+  +++ RK    GK +A+ICHG  IL +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDGN +    S  HP        EF++L
Sbjct:   69 GGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQILISAGVLKGRKGTSYIGIRDDMINAGVEWIDREV----VVDGNWV----SSRHPGDLYAWMREFVKL 164          
BLAST of CK740023 vs. ExPASy Swiss-Prot
Match: Y1281_ARCFU (Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus GN=AF_1281 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAALVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATSEGHPEFIRLSLKAL 303
            GG++PE + +N+  +++V+ F   GK +A+ICHG  +L +A+ VKGR+ T++  ++  LIAAGA + +       VVDGN+IT    +  P F    +K L
Sbjct:   69 GGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQLLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVITSRMPDDLPYFCGELIKIL 165          
BLAST of CK740023 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAALVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATSEGHP--------EFIRL 288
            GGRAPE + +N+  + + +K    GK +ASICHG  IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDGN +    S  HP        EF++L
Sbjct:   69 GGRAPEIVRLNEKAVAITKKMFEDGKPVASICHGPQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAEV----VVDGNWV----SSRHPGDLYAWMREFVKL 164          
BLAST of CK740023 vs. ExPASy Swiss-Prot
Match: YHBO_ECOLI (Protein yhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 37/102 (36.27%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAALVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATSEGHPEFIRLSLKALG 306
            GG +P+YL  ++  +   R F NSGK + +ICHG  +L +A V++GRK TA  P+   +  AGA + + E +   V    ++T  T +  P F R +L+ LG
Sbjct:   73 GGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVV---VDKDQLVTSRTPDDLPAFNREALRLLG 171          
The following BLAST results are available for this feature:
BLAST of CK740023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PFPI_PYRHO3.896e-1545.78Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRAB1.134e-1443.37Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRFU5.626e-1441.35Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]
Y1281_ARCFU3.647e-1337.62Uncharacterized protein AF_1281 OS=Archaeoglobus f... [more]
PFPI_PYRKO1.810e-1240.38Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
YHBO_ECOLI2.614e-1136.27Protein yhbO OS=Escherichia coli (strain K12) GN=y... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6517 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740023 ID=CK740023; Name=CK740023; organism=Citrus sinensis; type=EST; length=375bp
GGAGGAAGAGCTCCAGAATATCTTGCTATGAATGATTCTGTGATTGACTT
AGTGAGAAAATTCTCCAACTCGGGCAAAACAATTGCTTCCATTTGCCATG
GGCAGTTAATATTGGCAGCTGCTCTTGTGGTCAAAGGTCGAAAGTGCACA
GCATATCCTCCTGTGAAACCTGTGCTTATTGCCGCTGGTGCTTCTTGGAT
TGAGCCAGAGACCATGGCAGCTTGTGTTGTTGATGGTAACATCATTACTG
GGGCTACCTCTGAGGGTCATCCTGAGTTCATTCGGCTTTCTCTTAAAGCA
CTGGGTGGCACCATAACTGGCTCTGATAAGAGAATTCTTTTTCTTTGTGG
GGATTACATGGAAGATTATGAGGTA
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