CK740031

Overview
NameCK740031
Unique NameCK740031
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 1.458e-50
Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 328
            YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  +AP
Sbjct:   20 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 4.241e-50
Identity = 98/112 (87.50%), Postives = 106/112 (94.64%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAPPVF 337
            YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  +AP VF
Sbjct:   20 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVF 131          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 5.539e-50
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 328
            YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  +AP
Sbjct:   20 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 1.234e-49
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP-PVF 337
            YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  +AP P F
Sbjct:   20 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAF 132          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 8.843e-48
Identity = 97/114 (85.09%), Postives = 106/114 (92.98%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMIAPPVF 337
            YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++ A P +
Sbjct:   20 YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSY 133          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.515e-31
Identity = 66/99 (66.67%), Postives = 82/99 (82.83%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 298
            YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:   20 YYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 63/95 (66.32%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 286
            YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D + VD++T DML +LG   I
Sbjct:   20 YYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.283e-30
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 310
            YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:   20 YYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.675e-30
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 280
            YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:   20 YYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CK740031 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.675e-30
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 2
Query:    2 YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 280
            YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:   20 YYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
The following BLAST results are available for this feature:
BLAST of CK740031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS172_ARATH1.458e-5091.7440S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH4.241e-5087.5040S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS174_ARATH5.539e-5090.8340S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH1.234e-4988.5040S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC8.843e-4885.0940S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17B_SCHPO1.515e-3166.6740S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17A_SCHPO7.521e-3166.3240S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_BOVIN1.283e-3061.1740S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_THEPA1.675e-3066.6740S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN1.675e-3066.6740S ribosomal protein S17 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6525 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740031 ID=CK740031; Name=CK740031; organism=Citrus sinensis; type=EST; length=489bp
GTACTACTCAAGAATGACACTGGACTTCCATACCAACAAGAAGATTTTGG
AGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCGTAACAAAATTGCTGGG
TTCTCAACCCATTTGATGAAGAGGATTCAGAAGGGTCCAGTTCGTGGAAT
CTCCCTTAAATTGCAGGAAGAGGAGCGCGAACGCCGCATGGACTTTGTGC
CTGATGAGTCAGCTATTAAGACTGATGAAATTAAGGTTGACAAGGAAACC
TTGGATATGCTTGCTGCTCTTGGCATGTCTGACATTTCTGGGCTTGTTGA
AGTTGAGCCACAGAGCATGATTGCTCCTCCAGTTTTTGGTCGGGGTGGTG
GCAGGAGGTACTGAGTTAATTGAGGCTTTGTGGCTCAATCAAGAATGAGA
AGTTTAGGTTCTTATTAATCAGTACTTCTTGTGTTTGTTATGAATGCTTT
TGTGACTAGTTTTCTTTACTATTTTAAGAAGGGTGTTTA
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