CK740044

Overview
NameCK740044
Unique NameCK740044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3336 contig Csv1_Contig3336:567..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 6.172e-50
Identity = 94/115 (81.74%), Postives = 97/115 (84.35%), Query Frame = 2
Query:    2 NRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESG 346
            N QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT               DAAALIKE+G
Sbjct:  157 NSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENG 271          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.375e-49
Identity = 94/115 (81.74%), Postives = 96/115 (83.48%), Query Frame = 2
Query:    2 NRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKESG 346
            N QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT               DAAALIK SG
Sbjct:  162 NSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKASG 276          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.913e-49
Identity = 93/114 (81.58%), Postives = 96/114 (84.21%), Query Frame = 2
Query:    2 NRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            N+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF+ DPQT               DAAA I+ES
Sbjct:  147 NKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAAFIQES 260          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 5.596e-43
Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 2
Query:    2 NRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 271
            N+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDPFNGTNF+DCL+ F  DPQT
Sbjct:  132 NKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQT 221          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 5.237e-41
Identity = 79/112 (70.54%), Postives = 86/112 (76.79%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGTNF+DCL+ FL DP T               +AA  +KE
Sbjct:  161 RQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKE 272          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 164.081 bits (414), Expect = 1.990e-40
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGT+F+DCLE FL DP T               +AAA +KE
Sbjct:  161 RQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKE 272          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_RICCN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii GN=sucD PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.791e-40
Identity = 78/111 (70.27%), Postives = 85/111 (76.58%), Query Frame = 2
Query:   11 SKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDP NGTNFVDC+E FL D +T               DAA  IK+S
Sbjct:  115 SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQS 225          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 78/112 (69.64%), Postives = 85/112 (75.89%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T               +AA  +K+
Sbjct:  161 RQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQ 272          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 78/112 (69.64%), Postives = 85/112 (75.89%), Query Frame = 2
Query:    5 RQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKE 340
            RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T               +AA  +K+
Sbjct:  161 RQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQ 272          
BLAST of CK740044 vs. ExPASy Swiss-Prot
Match: SUCD_RICFE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis GN=sucD PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.877e-40
Identity = 78/111 (70.27%), Postives = 85/111 (76.58%), Query Frame = 2
Query:   11 SKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAALIKES 343
            SKTRLIGPNCPG+I PGECKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT VGLGQSTCVGIGGDP NGTNFVDC++ FL D +T               DAA  IK+S
Sbjct:  115 SKTRLIGPNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQS 225          
The following BLAST results are available for this feature:
BLAST of CK740044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA2_ARATH6.172e-5081.74Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA1_ARATH1.375e-4981.74Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA_ORYSJ8.913e-4981.58Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA_DICDI5.596e-4385.56Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_RAT5.237e-4170.54Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE1.990e-4069.64Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICCN5.791e-4070.27Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_PIG7.563e-4069.64Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN7.563e-4069.64Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_RICFE9.877e-4070.27Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6538 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740044 ID=CK740044; Name=CK740044; organism=Citrus sinensis; type=EST; length=348bp
AAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATCA
TCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAAA
CCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAGC
AGTTTTTCAAACAACTGTAGTTGGCCTTGGACAATCAACCTGTGTAGGTA
TAGGTGGGGATCCTTTTAATGGGACAAACTTTGTTGATTGCCTTGAAAAG
TTCCTAGTTGATCCCCAGACAGAAGGTATTATTCTAATAGGAGAGATCGG
TGGGACTGCAGAAGAGGATGCCGCTGCCTTGATAAAGGAAAGTGGGAC
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