CK740080

Overview
NameCK740080
Unique NameCK740080
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740080 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 2
Query:  296 KKYRGLCNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRK 460
            +K  G  +RDAVLARV TEKR+SLI+AWEESEKS+AENKA KK+S+I +WENS+K
Sbjct:   69 EKKEGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKK 123          

HSP 2 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 3
Query:  183 VADDKTVIPS---PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVTEMRCLQEL---KRRRGFR*LEHGKKVRSRKQRTKLIKSYLPLFHGRTAGSSCGS*AKKIEDNW-RKEG*VCREMKTD-GTIHKEAEE-RGHD*S*RGEDLLKAKELAAKYRATGSAPRSSLVVW 674
            VAD+K ++     PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS+     L  +   KR    +  E  +K ++  +  K + +     + + A        KK+E+   +K+     +MK     +HKEAEE R    + RGEDLLKA+ELAAKYRATG+AP+  L ++
Sbjct:   29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAE--LKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of CK740080 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  296 KKYRGLCNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRK-----QLWKLS*KD*GQLEKRR 511
            K   G  +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S + +WENS+K     QL K+  K    LEK++
Sbjct:   61 KASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEK----LEKKK 133          
BLAST of CK740080 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 60/165 (36.36%), Postives = 84/165 (50.91%), Query Frame = 3
Query:  180 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTE-GSVTEMRCLQELKRRRGFR*LEHGKKVRSRKQRTKLIKSYLPLFHGRTAGSSCGS*AKKIEDNW-RKEG*VCREMKTD-GTIHKEAEER-GHD*S*RGEDLLKAKELAAKYRATGSAPRSS 662
            DVA++K  I +PP E   ++SKAL VV+K  E   PA   S       ++  L + KR    R  E  +K ++  +  K I       + + A        KKIE+   +K+      MK     IHKEAEER     + RGED+LKA+E AAKYRATG  P+++
Sbjct:   48 DVAEEK--IQNPPPEQIFDDSKALTVVEKPVEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQ--LKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKAT 208          
The following BLAST results are available for this feature:
BLAST of CK740080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU6.004e-1570.91Remorin OS=Solanum tuberosum PE=1 SV=1[more]
REMO_ARATH2.361e-1149.35Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
Y3126_ARATH3.996e-1136.36Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6574 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740080 ID=CK740080; Name=CK740080; organism=Citrus sinensis; type=EST; length=727bp
CTTTCTCCTTGTTACTTGCTTTGTAAAGATCTTCAGCTTTGCTTTAAGCT
TAAGGTTTCGGAGCAGAGAGAGACATGGCAGAGGAGGAACCAAAGAAGCT
TGAAACTGAAACCCCGACCGAGCCGGCGCCTCCTCCTTCTACAGAACCAG
CCGCTCCGGCAGCAGCTGAGCCTCCTAAAGATGTTGCCGATGACAAGACC
GTAATTCCATCTCCACCTGCTGAGGATAAGCCTGAGGAATCCAAAGCCCT
TGCTGTTGTTGATAAGGCTCCTGAGGCTGAACCTCCTGCTGGTGAAAAAA
GTACAGAGGGCTCTGTAACAGAGATGCGGTGCTTGCAAGAGTTGAAACGG
AGAAGAGGATTTCGCTGATTAGAGCATGGGAAGAAAGTGAGAAGTCGCAA
GCAGAGAACAAAGCTCATAAAAAGCTATCTTCCATTGTTTCATGGGAGAA
CAGCCGGAAGCAGCTGTGGAAGCTGAGCTAAAAAGATTGAGGACAATTGG
AGAAAAGAAGGCTGAGTATGTAGAGAAATGAAAACAGATGGCACTATCCA
CAAGGAAGCAGAAGAAAGAGGGCATGATTGAAGCTAAAGAGGGGAAGACC
TTCTCAAGGCAAAGGAGCTGGCTGCCAAGTATCGAGCGACGGGCTCTGCC
CCAAGAAGCTCCTTAGTTGTTTGGAAGGTAAAATCTCAAGCTGTGTGATA
AATTAATTCTATGGATATTTCCTTGAG
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