CK740089

Overview
NameCK740089
Unique NameCK740089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.158e-42
Identity = 74/107 (69.16%), Postives = 95/107 (88.79%), Query Frame = 3
Query:    3 LIVWMRTAALPTFRRLYGRIESDIQANDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYVVMPRPLGDPAFLSWNRHPAG 323
            LIVWMRTAALPTFR+LYG+IESD++  D++ V + NNYNTYSF G+KKLVLSTT+W+GGKNDFLGIAY+T GG+C +LA++F ++Y+V PR LGDP++LSWNR+P G
Sbjct:  242 LIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGG 348          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.125e-42
Identity = 74/109 (67.89%), Postives = 96/109 (88.07%), Query Frame = 3
Query:    3 LIVWMRTAALPTFRRLYGRIESDIQANDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYVVMPRPLGDPAFLSWNRHPAGHQ 329
            LIVWMRTAALPTFR+LYG+IE+D+ A D++TV+++NNYNTYSF G+KKLVLSTT+W+GG+NDFLGIAY+T G +CL LA++F ++Y+V PR LGDP++LSWNR   G Q
Sbjct:  242 LIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGGLQ 350          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.189e-42
Identity = 74/107 (69.16%), Postives = 94/107 (87.85%), Query Frame = 3
Query:    3 LIVWMRTAALPTFRRLYGRIESDIQANDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYVVMPRPLGDPAFLSWNRHPAG 323
            LIVWMRTAALPTFR+LYG+IESD++  +++ V ++NNYNTYSF G+KKLVLSTT+W+GGKNDFLGIAY+T GG+C VLA++F ++Y+V PR LGDP +LSWNR P G
Sbjct:  243 LIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGG 349          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.560e-41
Identity = 72/107 (67.29%), Postives = 94/107 (87.85%), Query Frame = 3
Query:    3 LIVWMRTAALPTFRRLYGRIESDIQANDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYVVMPRPLGDPAFLSWNRHPAG 323
            LIVWMRTAALPTFR+LYG+I++D+QA D++ V+++NNYNTYSF G+KKLVLSTT+W+GG+NDFLGIAY+T G +CL LA+SF ++Y+  PR LGDP++LSWNR   G
Sbjct:  245 LIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 351          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.288e-27
Identity = 57/102 (55.88%), Postives = 76/102 (74.51%), Query Frame = 3
Query:    6 IVWMRTAALPTFRRLYGRIESDIQANDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYVVMPRPLGDPAFLSWNR 311
            IVWMR AAL +FR+LYGRIE D++    V V + NNYNTYSF G+KKL+LST+ W+GG+NDFLGI Y+  G   +V++I F+L+++  PRP GD    SWN+
Sbjct:  240 IVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLKNPRPYGDN---SWNK 338          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 3
Query:    6 IVWMRTAALPTFRRLYGRIE--SDIQAN---DSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVY 260
            IVWMRTAALPTFR+LY  IE  S++Q        ++ I  NY  +SF G K+++LST +W+GGKN FLGIAYIT G +C  L +  ++++
Sbjct:  269 IVWMRTAALPTFRKLYRLIERKSNLQPTLQAGKYSLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLGVVLLIIH 358          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: CC50B_MOUSE (Cell cycle control protein 50B OS=Mus musculus GN=Tmem30b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.253e-18
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 3
Query:    6 IVWMRTAALPTFRRLYGRIESDIQA----NDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYV 263
            +VWMRTAALPTFR+LY RI     +      +  V I  NY   +FGG K ++LS  +W+GGKN FLGIAY+  G LC+V+    ++VY+
Sbjct:  251 VVWMRTAALPTFRKLYARIRQGNYSAGLPRGTYRVNITYNYPVRAFGGHKLIILSNISWMGGKNPFLGIAYLVVGSLCIVMGFVMLVVYI 340          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: CC50B_HUMAN (Cell cycle control protein 50B OS=Homo sapiens GN=TMEM30B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.998e-17
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 3
Query:    6 IVWMRTAALPTFRRLYGRIESDIQA----NDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYV 263
            +VWMRTAALPTFR+LY RI     +      +  V I  NY   +FGG K L+ S+ +W+GGKN FLGIAY+  G LC++     ++VY+
Sbjct:  251 VVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYI 340          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: CC50A_MOUSE (Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3
Query:    6 IVWMRTAALPTFRRLYGRIESDIQANDSVT-----VIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILV 257
            IVWMRTAALPTFR+LY  IE     + ++      + I  NY  +SF G K+++LST +W+GGKN FLGIAYIT G +  +L +  +++
Sbjct:  261 IVWMRTAALPTFRKLYRLIERRDDLHPTLPAGQYFLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 349          
BLAST of CK740089 vs. ExPASy Swiss-Prot
Match: MUG89_SCHPO (Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe GN=mug89 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.660e-16
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    3 LIVWMRTAALPTFRRLYGRIESDIQANDSVTVIIENNYNTYSFGGEKKLVLSTTTWIGGKNDFLGIAYITGGGLCLVLAISFILVYVVMPRPLGDPAFLSWN 308
            L VWMRTA LPTF +L  R ++D     +  + I   +   SF G K LVL+T + +GGKN FLGIAYI    +C+VL   F L + + PR L D  +L+W+
Sbjct:  281 LQVWMRTAGLPTFSKLAMRNDNDDIFPGTYEIKIGLFFPVKSFDGTKSLVLTTRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRPRKLADHRYLNWD 382          
The following BLAST results are available for this feature:
BLAST of CK740089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ALIS3_ARATH3.158e-4269.16ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS5_ARATH4.125e-4267.89ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH9.189e-4269.16ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH4.560e-4167.29Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS2_ARATH1.288e-2755.88Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
CC50A_CHICK5.425e-1850.00Cell cycle control protein 50A OS=Gallus gallus GN... [more]
CC50B_MOUSE9.253e-1847.78Cell cycle control protein 50B OS=Mus musculus GN=... [more]
CC50B_HUMAN5.998e-1746.67Cell cycle control protein 50B OS=Homo sapiens GN=... [more]
CC50A_MOUSE5.077e-1647.19Cell cycle control protein 50A OS=Mus musculus GN=... [more]
MUG89_SCHPO8.660e-1644.12Meiotically up-regulated gene 89 protein OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6583 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740089 ID=CK740089; Name=CK740089; organism=Citrus sinensis; type=EST; length=539bp
ATCTTATAGTATGGATGCGCACTGCAGCACTGCCAACTTTTAGGAGACTG
TATGGAAGAATAGAAAGTGATATTCAAGCCAATGATTCAGTTACAGTCAT
AATTGAGAACAATTATAACACTTACAGTTTCGGTGGTGAAAAGAAGCTGG
TTCTTTCAACCACGACTTGGATAGGTGGAAAAAATGATTTTTTGGGCATA
GCATATATTACTGGTGGTGGATTATGCCTGGTCTTAGCAATAAGCTTCAT
ACTTGTGTATGTTGTCATGCCAAGGCCACTTGGGGATCCAGCTTTCTTGT
CTTGGAACAGGCATCCAGCAGGACATCAGATATAGGGTTTCTCACTGTAT
ATATTCCGCATCTATCTTCAATTGTCACAATTATTCCTTGCGTCCGTGGT
CACTGAGTAACTGTAGTTTTTACATTTGATGATGGGATGTTCTTATTTGG
AATGCAAAATTGTTTTTCTCAATAAGAAAAACAATTGTTTTTTCTTAACT
CTGTTAAAATTAAATTACTTTTACAAAAAAAAAAAAAAA
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