CK740140

Overview
NameCK740140
Unique NameCK740140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12558 contig Csv1_Contig12558:738..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740140 vs. ExPASy Swiss-Prot
Match: MCA4_ARATH (Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.250e-62
Identity = 96/164 (58.54%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  112 GKMPTPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXXSLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSKRS--LPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 597
            G   +PKVKKFMKV+L KL+                 LA  FL+ KL  +DE Y KPA++T VGSK++VYAGGS+ S  LPD GIL+SGCQTDQTSADA+P+GK +EAYGA+SN+IQ I+ E+DG ++NRE+V   R+ LKKQGFTQQPGLYCHD + + PFIC
Sbjct:  259 GDDSSPKVKKFMKVILGKLQAGNGEEGGLMGMLG--KLASGFLEGKL--NDEDYVKPAMQTHVGSKEEVYAGGSRGSVPLPDSGILISGCQTDQTSADATPAGKPTEAYGAMSNSIQTILEETDGEISNREMVTRARKALKKQGFTQQPGLYCHDGYANAPFIC 418          

HSP 2 Score: 70.8626 bits (172), Expect = 8.250e-62
Identity = 32/43 (74.42%), Postives = 39/43 (90.70%), Query Frame = 3
Query:    3 KNKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDADPK 131
            K+KSLPL TLI+ILKQQTG D+I+VGKIRP+LFD FG+D+ PK
Sbjct:  223 KDKSLPLQTLIDILKQQTGNDNIEVGKIRPSLFDAFGDDSSPK 265          
BLAST of CK740140 vs. ExPASy Swiss-Prot
Match: MCA5_ARATH (Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 8.252e-62
Identity = 94/162 (58.02%), Postives = 118/162 (72.84%), Query Frame = 1
Query:  112 GKMPTPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXXSLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 597
            G+  +PKVKKFMKV+L KL++                LAQEFLKHKL + DE Y KPA++T VG+K++VYAG S  SL D GIL+SGCQTDQTSADASP G    AYGA +NA+QII+ E+ G +T +ELVL  R++LKKQGF+Q+PGLYC D+ V+ PFIC
Sbjct:  253 GEDASPKVKKFMKVILTKLQEGKTEGGILGMIG---KLAQEFLKHKLND-DEEYVKPAMKTHVGNKQEVYAGASNGSLADNGILISGCQTDQTSADASPQGHPEMAYGAFTNAVQIILEETKGMITYKELVLKARKLLKKQGFSQRPGLYCSDSFVNAPFIC 410          

HSP 2 Score: 71.633 bits (174), Expect = 8.252e-62
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:    6 NKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDADPK 131
            NKSLPL TLI+ILKQ TG +DI+VGKIRPTLF++FGEDA PK
Sbjct:  218 NKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNVFGEDASPK 259          
BLAST of CK740140 vs. ExPASy Swiss-Prot
Match: MCA6_ARATH (Metacaspase-6 OS=Arabidopsis thaliana GN=AMC6 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.251e-51
Identity = 82/164 (50.00%), Postives = 108/164 (65.85%), Query Frame = 1
Query:  112 GKMPTPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXX--SLAQEFLKHKLEESDESYAKPALETEVGSKKDVYAGGSKRSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 597
            G   +PKVKKFM V+L+ L++                 +LAQEFL+ KL +      KPA++       DVYAG    +LPD GIL+SGCQTDQTS+DASP G    AYGAL+NAIQIII E+ G ++N++LVL  R++L+KQGF Q+PGLYC+D +V+  FIC
Sbjct:  216 GDDSSPKVKKFMNVILSNLQETTTTIQTVSDEVLGSVENLAQEFLEQKLSDD----VKPAIQ-------DVYAGAINGALPDNGILISGCQTDQTSSDASPPGHPELAYGALTNAIQIIIGETKGKISNKDLVLKARKLLRKQGFDQRPGLYCNDAYVNARFIC 368          

HSP 2 Score: 70.0922 bits (170), Expect = 4.251e-51
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 3
Query:    6 NKSLPLSTLIEILKQQTGKDDIDVGKIRPTLFDMFGEDADPK 131
            N+SLPL TLI++LKQ+TG DDI+VGKIR TLFDMFG+D+ PK
Sbjct:  181 NRSLPLETLIDMLKQETGNDDIEVGKIRTTLFDMFGDDSSPK 222          
BLAST of CK740140 vs. ExPASy Swiss-Prot
Match: MCA7_ARATH (Metacaspase-7 OS=Arabidopsis thaliana GN=AMC7 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.066e-33
Identity = 83/212 (39.15%), Postives = 121/212 (57.08%), Query Frame = 1
Query:    1 IRTSPYPSQHLLKYSSSKLVKMTLTSGR*GQPFLICLGKMPTPKVKKFMKVLLNKLKQXXXXXXXXXXXXXXXSLAQEFLKHKLEES----------DESYAKPALETEVGSKKDVYAGGSKRSL-PDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESD--GAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 597
            +R+   P +  ++    +  +  +  G+         G+  +PK+KKFMKV+L KL++                  Q  L  K+EES          DE Y KPA++ +V S +++Y G S   L PD GIL+SGCQTD+TSAD    G   EA+GA SNAIQ++++E+D    +TN+E+VL  R++LKKQ F Q+PGLYC+D  V+ PFIC
Sbjct:  210 VRSRYLPLERFIELLKQQTGQDNIEIGKIRPTLFDVFGEDSSPKIKKFMKVILTKLRKTND---------------QSTLLGKIEESARGYIEETLNDEHYMKPAMQAQVKSDREIYGGRSSNGLFPDRGILLSGCQTDETSADVKKKG---EAFGAFSNAIQMVLSETDHKDKITNKEMVLRAREILKKQMFIQRPGLYCNDRFVNAPFIC 403          
BLAST of CK740140 vs. ExPASy Swiss-Prot
Match: MCA8_ARATH (Metacaspase-8 OS=Arabidopsis thaliana GN=AMC8 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.959e-19
Identity = 49/96 (51.04%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  322 AGGSK-RSLPDGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIA---ESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFIC 597
            +G S+  ++ D GIL+SGCQTDQ S D   + +  +AYGA S+AIQ+I++   +    +TN+ELV   R  LKK+G++Q+PGLYCHD  VDKPFIC
Sbjct:  286 SGASRLNAVTDNGILLSGCQTDQRSEDVYVT-RTGKAYGAFSDAIQMILSAPRKDKKKITNKELVSEARVFLKKRGYSQRPGLYCHDRFVDKPFIC 380          
BLAST of CK740140 vs. ExPASy Swiss-Prot
Match: MCA9_ARATH (Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.898e-16
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  349 DGGILVSGCQTDQTSADASPSGKASEAYGALSNAIQIIIAESDGAVTNRELVLSTRQMLKKQGFTQQPGLYCHDNHVDKPFI 594
            D GIL+SGCQ D+TSAD        +AYGA SNAIQ ++ E++GA+ N++LV+  R +L++ GF Q P LYC D + D  F+
Sbjct:  243 DSGILMSGCQADETSADVGVGN--GKAYGAFSNAIQRVLNENEGAMKNKQLVMMARDVLERLGFHQHPCLYCSDQNADATFL 322          
The following BLAST results are available for this feature:
BLAST of CK740140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MCA4_ARATH8.250e-6258.54Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1... [more]
MCA5_ARATH8.252e-6258.02Metacaspase-5 OS=Arabidopsis thaliana GN=AMC5 PE=1... [more]
MCA6_ARATH4.251e-5150.00Metacaspase-6 OS=Arabidopsis thaliana GN=AMC6 PE=1... [more]
MCA7_ARATH4.066e-3339.15Metacaspase-7 OS=Arabidopsis thaliana GN=AMC7 PE=1... [more]
MCA8_ARATH1.959e-1951.04Metacaspase-8 OS=Arabidopsis thaliana GN=AMC8 PE=1... [more]
MCA9_ARATH5.898e-1648.78Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6634 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740140 ID=CK740140; Name=CK740140; organism=Citrus sinensis; type=EST; length=659bp
ATAAGAACAAGTCCCTACCCCTCTCAACACTTATTGAAATACTCAAGCAG
CAAACTGGTAAAGATGACATTGACGTCGGGAAGATAAGGCCAACCCTTTT
TGATATGTTTGGGGAAGATGCCGACCCCAAAAGTGAAGAAGTTCATGAAG
GTCCTTCTTAACAAACTTAAGCAAGGGGATGGTGAAAGTGGGGGTGGTGG
GTTTTTGGGCATGGTAGGTAGTCTCGCTCAAGAATTTCTAAAGCATAAGC
TGGAAGAGAGTGATGAGAGTTATGCAAAACCTGCCTTGGAGACTGAAGTG
GGCAGCAAGAAGGATGTTTATGCTGGAGGAAGCAAGCGCTCACTTCCTGA
TGGTGGGATTTTGGTCAGTGGATGTCAGACTGACCAAACTTCTGCTGATG
CCAGCCCTTCTGGGAAGGCTAGCGAAGCTTACGGAGCTCTCAGCAATGCA
ATTCAGATAATTATTGCTGAATCAGATGGTGCAGTGACTAACCGGGAGCT
TGTTTTGTCCACTAGGCAGATGTTGAAGAAGCAGGGATTCACTCAGCAAC
CTGGCCTTTATTGCCATGATAATCATGTTGATAAGCCGTTTATCTGCTGA
TACGAGCGGGTGCTTTTGGGGTTCAGGAGATCGAATAATTTAAACAGTTT
GCAGGGGTT
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