CK740143

Overview
NameCK740143
Unique NameCK740143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:808..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 2.073e-69
Identity = 138/203 (67.98%), Postives = 140/203 (68.97%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVNADAY  DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVA
Sbjct:  190 PTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 392          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.667e-68
Identity = 135/203 (66.50%), Postives = 137/203 (67.49%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVNAD Y PDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                   + LRVPTPN          SKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVA
Sbjct:  186 PTYVVGVNADLYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 388          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.940e-67
Identity = 135/203 (66.50%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVN + Y   + IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVA
Sbjct:  195 PTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 397          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.801e-66
Identity = 132/203 (65.02%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVNA+ Y  ++ IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVA
Sbjct:   27 PTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 229          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.778e-66
Identity = 132/203 (65.02%), Postives = 135/203 (66.50%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVNAD Y PDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYSQRVVDLADI A
Sbjct:  197 PTYVVGVNADQYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICA 399          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 8.150e-66
Identity = 134/203 (66.01%), Postives = 136/203 (67.00%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVNADAY   + IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          SKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYSQRVVDLADIVA
Sbjct:  199 PTYVVGVNADAYTHADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVA 401          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.657e-59
Identity = 117/203 (57.64%), Postives = 131/203 (64.53%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PT+VVGVN   YK + PIISNASCTTNCLAPFVKVL+QKFGI+KGTMTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTP            KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AWYDNEWGYSQRVVDLA++ A
Sbjct:  167 PTFVVGVNEGDYKHEYPIISNASCTTNCLAPFVKVLEQKFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALRVPTPTVSVVDLVVQVEKKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTA 369          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.180e-56
Identity = 118/205 (57.56%), Postives = 131/205 (63.90%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYVVGVN   Y  +   IISNASCTTNCLAPFVKV+D++ GI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          +KK   AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VA
Sbjct:  184 PTYVVGVNEQDYSHEVADIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGITAEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 388          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.703e-55
Identity = 117/205 (57.07%), Postives = 129/205 (62.93%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 609
            PTYV+GVN   Y  +   IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN          +KK   AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VA
Sbjct:  215 PTYVIGVNEQDYGHEVADIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 419          
BLAST of CK740143 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 8.454e-55
Identity = 116/206 (56.31%), Postives = 128/206 (62.14%), Query Frame = 1
Query:    1 PTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAT 612
            PTYV+GVN   Y  D   IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VA+
Sbjct:  211 PTYVMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAS 416          
The following BLAST results are available for this feature:
BLAST of CK740143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PA_ARATH2.073e-6967.98Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC6.667e-6866.50Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL1.940e-6766.50Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL2.801e-6665.02Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE4.778e-6665.02Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA8.150e-6666.01Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE5.657e-5957.64Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC1.180e-5657.56Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA1.703e-5557.07Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH8.454e-5556.31Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6637 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740143 ID=CK740143; Name=CK740143; organism=Citrus sinensis; type=EST; length=654bp
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGA
TTCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCAT
GGTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGAC
ATTGTTGCCACAACTGGGAGTGAAGTAAATACTAAATCGGAACTCGGCTG
TAAT
back to top