CK740150

Overview
NameCK740150
Unique NameCK740150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3530 contig Csv1_Contig3530:1455..2045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740150 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 5.005e-63
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 3
Query:    3 AGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQ 359
            AGDLGPL+PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQ
Sbjct:  448 AGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQ 566          

HSP 2 Score: 35.8094 bits (81), Expect = 5.005e-63
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  383 SVPPDADFVRPELRQGSN 436
            SVP DADFVRPELRQ SN
Sbjct:  574 SVPADADFVRPELRQSSN 591          
BLAST of CK740150 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.209e-61
Identity = 109/119 (91.60%), Postives = 117/119 (98.32%), Query Frame = 3
Query:    3 AGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQ 359
            AGDLGPL+PFTAGV+VA+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+
Sbjct:  438 AGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAE 556          

HSP 2 Score: 32.7278 bits (73), Expect = 1.209e-61
Identity = 16/21 (76.19%), Postives = 16/21 (76.19%), Query Frame = 2
Query:  374 LTFSVPPDADFVRPELRQGSN 436
            L  SVP  ADFVRPELRQ SN
Sbjct:  561 LDISVPAAADFVRPELRQCSN 581          
BLAST of CK740150 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.055e-61
Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = 3
Query:    9 DLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQ 359
            DLGPLHPFTAGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+
Sbjct:  438 DLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAE 554          

HSP 2 Score: 31.5722 bits (70), Expect = 2.055e-61
Identity = 14/17 (82.35%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  383 SVPPDADFVRPELRQGS 433
            SVP +ADFVRPELRQ S
Sbjct:  562 SVPANADFVRPELRQSS 578          
BLAST of CK740150 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.237e-60
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 3
Query:    3 AGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQ 359
            AGDLGPL+PFTAGVYVALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQ
Sbjct:  454 AGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQ 572          

HSP 2 Score: 28.8758 bits (63), Expect = 2.237e-60
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  383 SVPPDADFVRPELRQ 427
            SV  DADFVRPELRQ
Sbjct:  580 SVTADADFVRPELRQ 594          
BLAST of CK740150 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   54 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN---DAPINGD 302
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CK740150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_ARATH5.005e-6394.96Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_PEA1.209e-6191.60Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ2.055e-6193.16Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL2.237e-6094.12Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR1.588e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6644 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740150 ID=CK740150; Name=CK740150; organism=Citrus sinensis; type=EST; length=592bp
CAGCAGGTGACTTAGGCCCATTACACCCATTCACAGCTGGTGTCTATGTG
GCTCTGATGATGGCCCAGATTGAGATCCTGAGGAAGAAAGGGCACTCCTA
TTCTGAGATCATCAATGAGAGTGTGATTGAGTCAGTGGATTCATTGAATC
CATTCATGCATGCTCGTGGAGTTTCATTTATGGTGGACAACTGCTCTACC
ACAGCCCGTTTGGGATCAAGGAAATGGGCCCCTCGTTTTGATTACATCCT
GACACAACAAGCCTTGGTGGCAGTGGACAATGATGCCCCCATCAATGGGG
ATCTCATCAGCAACTTCCTTTCTGATCCAGTCCATGGAGCCATTGAAGTC
TGTGCTCAGTTTGAGACCAACTGTTGACATTTTCAGTGCCACCAGATGCA
GATTTTGTGCGCCCAGAGTTGCGTCAGGGTAGCAATTGAGTCCTGGTGAA
TGCTTAACTTTTTGTTTCTAGCCCAAAAAATAATTCCCCCTAGGGATATT
GTAGGTAGAGACTTTGCTTAGTCGTGTGAGTTGCTGCTTCTTATTTAGTT
TTGCTGGGTGAGTGTTGCACTATGTCCGGTTTGGTTGAAGAA
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