CK740153

Overview
NameCK740153
Unique NameCK740153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: NUD26_ARATH (Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.477e-55
Identity = 101/146 (69.18%), Postives = 121/146 (82.88%), Query Frame = 3
Query:   84 NYPHKLPKSTNLPLVHH--QNQICSSSY----SMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            NYP K  K ++LP +H   ++++ SSS     SM++PPEGYRRNVG+CL+NSSKKIF ASRLDIP +WQMPQGGIDE EDP+VA +RELKEETGV SAE+LAE P+W+TYDFPP+VRE L +  G DWKGQAQKWFLLKFTGK+EE
Sbjct:   23 NYPSKPIKFSSLPFLHRCRKSRVSSSSARCCSSMESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEETGVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEE 168          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: NUD27_ARATH (Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.536e-41
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 3
Query:  108 STNLPLVHHQNQICSSSYSMDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            S+  PLV     + S + ++++PP GYR+NVGICL++  +KIF AS++ IPD+WQMPQGG DE ED + AA REL+EETGV+SAE +AE+P WLTYDFP EV++ LN      +KGQAQKWFL KFTGKEEE
Sbjct:   36 SSPKPLVVLSVALSSPARTVESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEE 167          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: NUD25_ARATH (Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.016e-38
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 3
Query:  165 MDAPPEGYRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            M+  P GYR NVG+CLINS   +F ASRL++P +WQMPQGGI++ EDPK AA+REL+EETGV SAE+++EVP WLTYDFPP V+  +N   GG+W GQAQKW+L++    E+E
Sbjct:    1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEETGVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDE 113          

HSP 2 Score: 22.3274 bits (46), Expect = 2.016e-38
Identity = 8/22 (36.36%), Postives = 11/22 (50.00%), Query Frame = 2
Query:  503 INLLGDNLRT*VGEWKWMSPNK 568
            INL  +   +   EWKW  P +
Sbjct:  116 INLANNEADSEFAEWKWAKPEE 137          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_RHORT (RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rppH PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.045e-25
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR+ VGI LIN+  ++F A RLD P++WQMPQGGID  EDP+ AA RE++EE G  +A +L E   WL YD P E+R  L    GG ++GQ QKWF  +FTG++ +
Sbjct:   14 YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNALLLGETAGWLGYDLPEELRGRL---WGGRFQGQRQKWFAFRFTGQDAD 116          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_RHOSK (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.038e-24
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VGI LIN    IFA  R+D P  +WQMPQGGIDE E P+ AALREL EETG+ +   E +A+ P W+TYD PPE+   L    GG ++GQ QKWFL ++ G +EE
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEE 117          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_RHOS4 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.038e-24
Identity = 59/109 (54.13%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VGI LIN    IFA  R+D P  +WQMPQGGIDE E P+ AALREL EETG+ +   E +A+ P W+TYD PPE+   L    GG ++GQ QKWFL ++ G +EE
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEE 117          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_RHOS1 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rppH PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VGI LIN    IFA  R+D P  +WQMPQGGIDE E P+ AALREL EETG+ +   E +A+ P W+TYD PPE+   L    GG ++GQ QKWFL ++ G ++E
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDE 117          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_RHOS5 (RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rppH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.500e-23
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VGI LIN    IFA  R+D P  +WQMPQGGID +E P+ AALREL+EETG+     E +A+ P W+TYD PP++   L    GG ++GQ QKWFL ++ G +E+
Sbjct:   12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDLVEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQ 117          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_GLUOX (RNA pyrophosphohydrolase OS=Gluconobacter oxydans GN=rppH PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.275e-23
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIP-DSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR NVGI L N   K+F A R D+P D WQ PQGGIDE E P+VAALRE+ EE G  +A +LAE   WL+YD P ++   +    GG ++GQ QKWF++ + G++ +
Sbjct:    9 YRPNVGIALFNRDGKLFIARRTDLPGDVWQCPQGGIDEGETPQVAALREMGEEIGTQNARILAERSGWLSYDLPSDL---IGKALGGRFRGQTQKWFVMGYEGQDSD 112          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_ACICJ (RNA pyrophosphohydrolase OS=Acidiphilium cryptum (strain JF-5) GN=rppH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.621e-22
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDI-PDS---WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEE 500
            YR NVG  L + + KI  A R D+ PD+   WQ+PQGGID +EDP  A LREL EE G ++ E+L E+P WL+YDFPP+V        G   +GQ Q+WF L+F G ++
Sbjct:    9 YRSNVGAALFSRAGKILVARRADLGPDAAYQWQLPQGGIDGDEDPAAAVLRELDEEIGTTAVELLGEIPEWLSYDFPPDVVAKF----GARHRGQRQRWFALRFLGTDD 113          
The following BLAST results are available for this feature:
BLAST of CK740153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
NUD26_ARATH2.477e-5569.18Nudix hydrolase 26, chloroplastic OS=Arabidopsis t... [more]
NUD27_ARATH4.536e-4159.85Nudix hydrolase 27, chloroplastic OS=Arabidopsis t... [more]
NUD25_ARATH2.016e-3861.06Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT... [more]
RPPH_RHORT2.045e-2551.89RNA pyrophosphohydrolase OS=Rhodospirillum rubrum ... [more]
RPPH_RHOSK5.038e-2454.13RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_RHOS45.038e-2454.13RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_RHOS11.122e-2353.21RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_RHOS52.500e-2351.38RNA pyrophosphohydrolase OS=Rhodobacter sphaeroide... [more]
RPPH_GLUOX7.275e-2349.53RNA pyrophosphohydrolase OS=Gluconobacter oxydans ... [more]
RPPH_ACICJ1.621e-2248.62RNA pyrophosphohydrolase OS=Acidiphilium cryptum (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6647 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740153 ID=CK740153; Name=CK740153; organism=Citrus sinensis; type=EST; length=607bp
GTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTTCATCTTTCTTCTCTC
CTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAATTACCCTCATAAACT
CCCCAAATCTACTAACCTGCCACTCGTTCATCATCAGAATCAAATTTGCT
CATCATCATACTCCATGGACGCTCCTCCAGAAGGTTACCGAAGAAATGTC
GGCATCTGTCTCATCAATTCTTCCAAAAAGATTTTCGCCGCTTCGAGACT
TGACATACCTGATAGTTGGCAAATGCCACAGGGCGGTATTGACGAGAATG
AGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAAGAAGAAACAGGAGTC
AGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTGGTTGACATATGACTT
CCCTCCAGAAGTCAGGGAAAACTTAAACATCAATGGGGGAGGTGACTGGA
AAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTCACTGGCAAGGAGGAA
GAATCAATCTTCTTGGTGATAATCTGAGAACCTGAGTTGGCGAGTGGAAG
TGGATGTCACCAAACAAATACTTGAGCGTGCTGGGGATTCAAGAACCTGT
TACAAAG
back to top