CK740158

Overview
NameCK740158
Unique NameCK740158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740158_ssr64 microsatellite CK740158_ssr64:64..73. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740158_ssr228 microsatellite CK740158_ssr228:228..239. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:378..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 3.272e-40
Identity = 84/94 (89.36%), Postives = 86/94 (91.49%), Query Frame = 3
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   45 AGDKKKKRVKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 138          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.289e-40
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = 3
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   35 AGDKKKKRSKKAVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 128          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 162.54 bits (410), Expect = 9.520e-40
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 3
Query:  222 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 141          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 2.121e-39
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 3
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S D        S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   36 SSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 129          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 2.121e-39
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = 3
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 139          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 3.618e-39
Identity = 81/94 (86.17%), Postives = 86/94 (91.49%), Query Frame = 3
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   46 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 139          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 4.725e-39
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 136          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.059e-39
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 3
Query:  222 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   44 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 136          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.059e-39
Identity = 81/93 (87.10%), Postives = 84/93 (90.32%), Query Frame = 3
Query:  222 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            GD        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   49 GDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 141          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_ARATH (Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.059e-39
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   60 STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 142          
The following BLAST results are available for this feature:
BLAST of CK740158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B_GOSHI3.272e-4089.36Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC7.289e-4088.30Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B11_ARATH9.520e-4089.25Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B3_MEDTR2.121e-3987.23Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_MEDTR2.121e-3987.23Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH3.618e-3986.17Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B_CAPAN4.725e-3997.59Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B7_ARATH8.059e-3987.10Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH8.059e-3987.10Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B3_ARATH8.059e-3997.59Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6652 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740158 ID=CK740158; Name=CK740158; organism=Citrus sinensis; type=EST; length=502bp
CCTCGTGCGCACGAGGATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTA
CAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAA
GGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACAT
CGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAG
CTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAA
GAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTAC
ATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTC
ATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAG
GTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGA
GACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACC
AA
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