CK740179

Overview
NameCK740179
Unique NameCK740179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2984 contig Csv1_Contig2984:398..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740179 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 2.772e-11
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 VEDDRVLQISGQRKIEKEDKNDTWHR 79
            VE+DRVLQISG+R +EKEDKNDTWHR
Sbjct:   76 VEEDRVLQISGERNVEKEDKNDTWHR 101

HSP 2 Score: 34.2686 bits (77), Expect = 2.772e-11
Identity = 18/40 (45.00%), Postives = 21/40 (52.50%), Query Frame = 1 
Query:  121 LPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 240
            LPEN KMDQ+KASME+G                 +I ISG
Sbjct:  115 LPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154
[Close]
BLAST of CK740179 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 6.067e-11
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 2 
Query:    2 VEDDRVLQISGQRKIEKEDKNDTWHR 79
            +EDDRVLQISG+R +EKEDKNDTWHR
Sbjct:   75 IEDDRVLQISGERNLEKEDKNDTWHR 100

HSP 2 Score: 32.3426 bits (72), Expect = 6.067e-11
Identity = 17/40 (42.50%), Postives = 21/40 (52.50%), Query Frame = 1 
Query:  121 LPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 240
            LPEN K++Q+KASME+G                 AI ISG
Sbjct:  114 LPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153
The following BLAST results are available for this feature:
BLAST of CK740179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HSP12_SOLPE2.772e-1184.6217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP13_SOYBN6.067e-1184.6217.5 kDa class I heat shock protein OS=Glycine max... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6674 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740179 ID=CK740179; Name=CK740179; organism=Citrus sinensis; type=EST; length=358bp
GGTCGAAGATGACAGGGTGCTTCAGATAAGCGGTCAGAGGAAGATTGAGA
AGGAAGACAAGAACGACACGTGGCATCGCCGTTGAGCCGTAGCAGTGGCA
TGTTCTCAAGGAGGTTCAGGCTGCCTGAGAATGTGAAGATGGATCAGATT
AAGGCTTCCATGGAGAGTGGTGTGCTCACTGTTACTGTTCCGAAAGTGGA
GGTGACCAAACCTGATGTTAAGGCTATCGCAATCTCTGGTTAAACCAGTG
TCTGTCTGTATGTCTTTATGCATACTTGTATAAGGATGCTGTGATGTTTT
GGTTTTGTAATTTGCTTGCATGAATGTTTGTGTAATGGTATTCTGTTCAT
TTGAAAAA
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