CK740202

Overview
NameCK740202
Unique NameCK740202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:122..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK740202 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 47/115 (40.87%), Postives = 57/115 (49.57%), Query Frame = 1 
Query:   76 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWD 408
            MAS+LALKRL+S ++ PR+ R  + P+ +S  R FNTNAVR Y                                    TRS+SQVLN MDQ  E+P  S TRG    G RRGWD
Sbjct:    1 MASALALKRLLSSSIAPRS-RSVLRPAVSS--RLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWD 110
The following BLAST results are available for this feature:
BLAST of CK740202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HS23M_ARATH5.741e-1140.8723.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6697 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740202 ID=CK740202; Name=CK740202; organism=Citrus sinensis; type=EST; length=412bp
AGAAATCAGCCGCAGTCACAAAAAGTATTTTGAAATCTCTGCATTGTTTT
GTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTCAAGA
GGCTTGTTTCTTTTAATCTCATCCCCAGGGCTTTACGCTGCACCGTCGCT
CCTTCTGCTACTTCGGCATCTCGGTTCTTCAACACAAACGCTGTTCGTCA
ATACGATGACGGCGGAGACGACCGTGATCTCGACATTGATCGCCGTTCCG
CTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGTTTGAT
CCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGGATCA
GATGACGGAAAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGCGCCGAG
GCTGGGATGCTA
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