CK740246

Overview
NameCK740246
Unique NameCK740246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.366e-33
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDPMLPGEM 466
            GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP D MLPGEM
Sbjct:  365 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 437          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.559e-32
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDPMLPGEM 466
            GIAEDIVFSMPCRSKGDGDYELV DVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP D MLPGEM
Sbjct:  369 GIAEDIVFSMPCRSKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 441          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.559e-32
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDPMLPGEM 466
            GIAEDIVFSMPCRSKGDGDYE VKDVIFDDYL K+I K+E ELLAEKKCVAHLTGEGIA CDLPED MLPGEM
Sbjct:  381 GIAEDIVFSMPCRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 453          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.351e-30
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DPMLPGEM 466
            GIAED+VFSMPCRSKGDGDYELVKDV+FDDYLR+RI K+E+ELLAEK+C AHLTGEG+A CDLP  D MLPGEM
Sbjct:  368 GIAEDLVFSMPCRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEKRCTAHLTGEGVAVCDLPAGDTMLPGEM 441          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DPMLPGEM 466
            GIAED+++SMPCRSKGDGDYELVKDVIFDDYLRKRI  +E+ELLAEK+C AHLTGEGIA CDLP  D MLPGEM
Sbjct:  362 GIAEDLIYSMPCRSKGDGDYELVKDVIFDDYLRKRIKTSEEELLAEKRCTAHLTGEGIAVCDLPAGDTMLPGEM 435          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.820e-29
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDPMLPGEM 466
            GIAEDIVFSMPCRSKGDGDYEL  DV+ DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPED MLPGE+
Sbjct:  360 GIAEDIVFSMPCRSKGDGDYELASDVLMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAFCDLPEDTMLPGEV 432          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.400e-28
Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = -3
Query:  251 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDPMLPGE 466
            GIAEDIVFSMPCRSKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPED MLPGE
Sbjct:  360 GIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGDAFCDLPEDTMLPGE 431          
BLAST of CK740246 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.319e-28
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = -3
Query:  248 GIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDPMLPGEM 466
            GIAEDIVFSMPCRSKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG A+CD+PED MLPGE+
Sbjct:  357 GIAEDIVFSMPCRSKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPGEV 429          
The following BLAST results are available for this feature:
BLAST of CK740246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MDHP_MEDSA9.366e-3390.41Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP_PEA3.559e-3289.04Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_FLABI3.559e-3289.04Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP_MESCR4.351e-3082.43Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_SPIOL1.266e-2982.43Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDHP_MAIZE2.820e-2982.19Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP2_SORBI1.400e-2883.33Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP1_SORBI5.319e-2879.45Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6741 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740246 ID=CK740246; Name=CK740246; organism=Citrus sinensis; type=EST; length=468bp
ACAGAATGTCAACGTTCTTATGTGGGGGGGTATATCAGTGTCGAGTATTC
ACACATAAGGTAACCACGGCAAAAGCCAAGCCAAGCCAACTTGACTGGAC
ACTTCCAATCTCAAATTTCATTAAATGGTTTAATATTGGCACGTTATCCT
GCACACTCGTAATAAATAGATAGTTCATATTCTGCCTTCTCACTCTACAG
CTTATTGCAGTAGCAGTCATGATTTCCTAAAGCCCTAACCACGTTTACAT
TTCTCCGGGAAGCATCGGGTCCTCTGGTAGATCACAAAAAGCAATGCCCT
CTCCTGTAAGATGGGCCACACATTTCTTCTCAGCTAGCAACTCTTGTTCG
GTCTTCGCTATCCGCTTGCGAAGGTAGTCATCAAATATTACATCCTTGAC
AAGTTCATAATCACCATCTCCTTTTGATCTGCATGGCATGCTGAAAACAA
TATCCTCTGCTATGCCGT
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