CK740273

Overview
NameCK740273
Unique NameCK740273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYGM1_ARATH (Glycyl-tRNA synthetase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.562e-39
Identity = 93/164 (56.71%), Postives = 101/164 (61.59%), Query Frame = 3
Query:    3 CVGIADRSAYDLHAHTGKEWCRACSTGEIFRT*GSGENW*LLQ*RKSWVLHSREAXXXXXXXXXXXXXXXXXXXXPHWNRKGRWEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            CVGIADRSAYDL AH+ K      +  E F      E   +   +K   L  +                           KG  EFYVCTL K+V IKKNM+ ISKEKKKEHQRVFTP VIEPSFGIGRIIYCLYEH F TRPSKAGDEQLN+FRFPPLVAPIK
Sbjct:  455 CVGIADRSAYDLRAHSDKSGTPLVAE-EKFAEPKEVEKLVITPVKKELGLAFKGNQKNVVESLEAMNEEEAMEMKATLESKGEVEFYVCTLKKSVNIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLYEHCFSTRPSKAGDEQLNLFRFPPLVAPIK 617          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_YEAST (Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisiae GN=GRS1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 54/164 (32.93%), Postives = 74/164 (45.12%), Query Frame = 3
Query:    3 CVGIADRSAYDLHAHTGKEWCRACSTGEIFRT*GSGENW*LLQ*RKSWVLHSREAXXXXXXXXXXXXXXXXXXXXPHWNRKGRWEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            CVG ADRSAYDL  H+ K   +     ++         W +   +K +    R+                           G++   V  +   V +   ++ I +  K EH R + P VIEPSFGIGRIIY ++EHSF+ RP    D   +V  FPPLVAP K
Sbjct:  388 CVGCADRSAYDLTVHSKKTKEKLVVRQKLDNPI-EVTKWEIDLTKKLFGPKFRKDAPKVESHLLNMSQDDLASKAELLKANGKFTIKVDGVDGEVELDDKLVKIEQRTKVEHVREYVPSVIEPSFGIGRIIYSVFEHSFWNRPE---DNARSVLSFPPLVAPTK 547          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_SCHPO (Putative glycyl-tRNA synthetase OS=Schizosaccharomyces pombe GN=SPAC3F10.03 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  291 IKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            ++ +++ I K K  EH R +TP VIEPSFG+GRI+Y L EH+++TRP    D    V  FP  +APIK
Sbjct:  474 VESDLVTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLMEHAYWTRPE---DVNRGVLSFPASIAPIK 538          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_RAT (Glycyl-tRNA synthetase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  255 EFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            EF + T GK   + K+M+ + + +K  H     P VIEPSFG+GRI+Y + EH+F+ R    GDEQ   F FP +VAP K
Sbjct:  437 EFTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVR---EGDEQRTFFSFPAVVAPFK 513          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_MOUSE (Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  255 EFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            EF + T GK   + K+M+ + + +K  H     P VIEPSFG+GRI+Y + EH+F+ R    GDEQ   F FP +VAP K
Sbjct:  529 EFTIETEGKTFQLTKDMVSVKRFQKTLHVEEVVPSVIEPSFGLGRIMYTILEHTFHVR---EGDEQRTFFSFPAVVAPFK 605          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_HUMAN (Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  237 NRKGRWEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            N KG  EF + T GK   + K+M+ + + +K  +     P VIEPSFG+GRI+Y ++EH+F+ R    GDEQ   F FP +VAP K
Sbjct:  535 NEKG--EFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVR---EGDEQRTFFSFPAVVAPFK 615          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_CAEEL (Glycyl-tRNA synthetase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.208e-12
Identity = 39/73 (53.42%), Postives = 44/73 (60.27%), Query Frame = 3
Query:  276 GKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            G+N  +    L I K  KK H +  TP VIEPS+GIGRI+Y L EHSF  R    GDEQ     F PLVAPIK
Sbjct:  556 GQNYALTPEHLNIKKYTKKIHVQEITPSVIEPSYGIGRIMYALLEHSFRQR---EGDEQRTFLAFKPLVAPIK 625          
BLAST of CK740273 vs. ExPASy Swiss-Prot
Match: SYG_PONAB (Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.108e-12
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  237 NRKGRWEFYVCTLGKNVCIKKNMLLISKEKKKEHQRVFTPLVIEPSFGIGRIIYCLYEHSFYTRPSKAGDEQLNVFRFPPLVAPIK 494
            N KG  EF + T GK   + K+M+ + + +K  +     P VIEPSFG+GRI+Y ++EH+F+ R    GDEQ   F FP +VAP K
Sbjct:  535 NEKG--EFTIETEGKTFQLTKDMVNVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVR---EGDEQRTFFSFPAVVAPFK 615          
The following BLAST results are available for this feature:
BLAST of CK740273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SYGM1_ARATH4.562e-3956.71Glycyl-tRNA synthetase 1, mitochondrial OS=Arabido... [more]
SYG_YEAST2.521e-1332.93Glycyl-tRNA synthetase 1 OS=Saccharomyces cerevisi... [more]
SYG_SCHPO6.208e-1248.53Putative glycyl-tRNA synthetase OS=Schizosaccharom... [more]
SYG_RAT6.208e-1245.00Glycyl-tRNA synthetase (Fragment) OS=Rattus norveg... [more]
SYG_MOUSE6.208e-1245.00Glycyl-tRNA synthetase OS=Mus musculus GN=Gars PE=... [more]
SYG_HUMAN6.208e-1244.19Glycyl-tRNA synthetase OS=Homo sapiens GN=GARS PE=... [more]
SYG_CAEEL6.208e-1253.42Glycyl-tRNA synthetase OS=Caenorhabditis elegans G... [more]
SYG_PONAB8.108e-1244.19Glycyl-tRNA synthetase OS=Pongo abelii GN=GARS PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6416 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740273 ID=CK740273; Name=CK740273; organism=Citrus sinensis; type=EST; length=496bp
AATGTGTCGGCATTGCAGATAGGTCTGCGTATGACCTGCATGCTCACACC
GGAAAAGAGTGGTGTCGCGCTTGTAGCACAGGAGAAATTTTCAGAACCTA
GGGAAGTGGAGAAAATTGGTAATTGCTCCAGTGAAGAAAGAGCTGGGTCT
TGCATTCAAGGGAAGCCAAAAGAATGTGGTTGAAGCTTTGGAGGCTATGA
ATGAGAAAGAAGCTATGGAGATGAAGGCCGCATTGGAATCGAAAGGGGAG
GTGGGAGTTTTATGTCTGCACTCTGGGAAAAAATGTTTGCATTAAGAAGA
ACATGTTGTTAATTTCTAAGGAGAAAAAGAAAGAACACCAGAGAGTTTTC
ACCCCACTAGTTATAGAGCCATCTTTTGGCATTGGTCGAATTATATACTG
CCTCTATGAGCACTCTTTCTATACAAGGCCAAGTAAAGCTGGGGATGAAC
AGTTAAATGTTTTCCGTTTCCCCCCTCTTGTGGCACCTATTAAGTG
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