CK740279

Overview
NameCK740279
Unique NameCK740279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9536 contig Csv1_Contig9536:25..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.512e-37
Identity = 76/167 (45.51%), Postives = 112/167 (67.07%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEA 624
            M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK + +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A
Sbjct:    1 MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQA 167          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.228e-36
Identity = 76/167 (45.51%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEA 624
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK + +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQA 167          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.228e-36
Identity = 76/167 (45.51%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADEL-ARYLDLK-KLDERVCMFEA 624
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK + +E L G P+L+LANKQD+   +S  ++   + D   K+  R C+ +A
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQA 167          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.736e-36
Identity = 75/167 (44.91%), Postives = 112/167 (67.07%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEA 624
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK + +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQA 167          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.736e-36
Identity = 75/167 (44.91%), Postives = 112/167 (67.07%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYS-NVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLD--LKKLDERVCMFEA 624
            M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ ++ N +G+   +I  TVGLNIG ++V  ++L+FWDLGGQ  L+S+W+KYY E H V++VID+    R  +SK A EK + +E L G P+L+LANKQD+   +S  ++         K+  R C+ +A
Sbjct:    1 MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQA 167          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 59/147 (40.14%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  133 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV-FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADEL 570
            MF L  GL+     K ++ +LILG+D AGKTT LE LK  YS +     ++I PTVG N+  I V + +++ FWD+GGQ  LRS+W +YY   H ++F++D++   R ++  T L+  + +E+++G P+L+LANKQD  D +   ++
Sbjct:    1 MFHLVKGLYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYS-LAFKALEKIQPTVGQNVATIPVDSKQILKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDI 146          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 62/140 (44.29%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  181 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLD 600
            E  +L+LG+D AGKTT+L+K         G     I PT+G NI  +     KL  WD+GGQ  LRS W  YYEE  AV++VID++   R +D K  L+K L  E   GA  L+ ANKQDL  A++++E+++YLDL++L+
Sbjct:   16 ELRILMLGLDNAGKTTILKKFN-------GEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLN 148          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  127 LEMFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER-VCMF 618
            +  F      +K +F K E  + ++G+  +GKTTL+    +V SN  G   D I PT+G N+ ++   N  +  WD+GGQP  RS+WE+Y    +A+VFV+D+A   +FE SK AL+  +    L   PLL++ANK DLP++   DE+ + LDL+ +  R VC +
Sbjct:    1 MNFFESIINFFKSLFWKQEMELTLVGLQGSGKTTLV----NVISN-GGFIEDTI-PTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREVCCY 159          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 61/149 (40.94%), Postives = 90/149 (60.40%), Query Frame = 1
Query:  166 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC--PSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDER 606
            +F+K E  +L++G+D AGKTT+L KL  +   V        VPT+G N+  +E  N     WD+GGQ  +R +W  YY+   A+++VID+A   P R ED+K  L   L  ++L+ A LL+ ANKQDLP A+S  +L   L L++L +R
Sbjct:   12 LFSKKEVRILMVGLDAAGKTTILYKL--MLGEVV-----TTVPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKR 153          
BLAST of CK740279 vs. ExPASy Swiss-Prot
Match: ARF_NEUCR (ADP-ribosylation factor OS=Neurospora crassa GN=NCU08340 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 58/164 (35.37%), Postives = 96/164 (58.54%), Query Frame = 1
Query:  139 SLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLK--SVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKGLRNEDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEA 624
            S+F  L+  +F K E  +L++G+D AGKTT+L KLK   V + +         PT+G N+  +E  N +   WD+GGQ  +R +W  Y++    ++FV+D+    R  +++  L++ L  ++L+ A LL+ ANKQDLP+A++A E+   L L  L +R    +A
Sbjct:    6 SIFGKLFDGLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTI---------PTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLSSLRQRSWYIQA 160          
The following BLAST results are available for this feature:
BLAST of CK740279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
ARFRP_BOVIN5.512e-3745.51ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
ARFRP_RAT1.228e-3645.51ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_MOUSE1.228e-3645.51ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_PONAB2.736e-3644.91ADP-ribosylation factor-related protein 1 OS=Pongo... [more]
ARFRP_HUMAN2.736e-3644.91ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
ARL3_YEAST1.777e-2740.14ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
ARL2_DICDI3.352e-2644.29ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL8_DICDI2.838e-2538.18ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARF_GIALA2.838e-2540.94ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF_NEUCR1.408e-2435.37ADP-ribosylation factor OS=Neurospora crassa GN=NC... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6422 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740279 ID=CK740279; Name=CK740279; organism=Citrus sinensis; type=EST; length=626bp
GATTGCCGAGAGCTCTCTTCTTCAATCTCTCAAAATGTACATGAGTGAGA
CTTTGGTATTATGAAGCCCTTTTCTTCTCACGGTTGAAGGTTAGCGGGAA
TAAATACAAATTAACCGTTAAAGAAGTTAGAGATGTTCTCGCTGTTTTAT
GGACTTTGGAAGTATATATTTACTAAGACTGAGTTTCATGTGCTCATTCT
TGGAATTGACAAGGCTGGGAAAACGACTTTGTTGGAGAAGTTGAAGTCTG
TCTACTCAAATGTGGAAGGCCTCCCACCTGATCGAATTGTTCCTACTGTG
GGACTGAATATTGGTCGTATTGAAGTTTCAAATTCAAAGCTGGTCTTCTG
GGATCTGGGTGGTCAGCCTGGCCTTCGTTCAATTTGGGAGAAATATTATG
AAGAGGCACATGCTGTGGTATTTGTAATTGATGCTGCTTGCCCTTCACGT
TTTGAAGATTCAAAAACTGCTCTAGAAAAGGGTCTTCGGAATGAGGATTT
GCAAGGAGCGCCACTTTTGATACTAGCAAACAAACAGGATCTTCCTGATG
CTGTATCAGCTGATGAACTAGCACGATATCTAGACCTTAAGAAGTTGGAT
GAACGGGTTTGCATGTTTGAAGCAGT
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