CK740288

Overview
NameCK740288
Unique NameCK740288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740288 vs. ExPASy Swiss-Prot
Match: GUN19_ARATH (Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11050 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.703e-29
Identity = 57/88 (64.77%), Postives = 74/88 (84.09%), Query Frame = 3
Query:  156 QKLTTSWISNGKRDYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLPAGKSLEFVYIHTANAADVSVSAYTL 419
            QK+T SW + GK  YRYSTI+TN+S KTLK LK+SI+KLYGP+WG+T  GN++ FPSW+ +LP+GKS+EFVYIH+A+ ADV VS Y+L
Sbjct:  538 QKMTNSWKNEGKVYYRYSTILTNRSTKTLKILKISITKLYGPIWGVTKTGNSFSFPSWMQSLPSGKSMEFVYIHSASPADVLVSNYSL 625          
BLAST of CK740288 vs. ExPASy Swiss-Prot
Match: GUN6_ARATH (Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 7.863e-29
Identity = 55/89 (61.80%), Postives = 74/89 (83.15%), Query Frame = 3
Query:  156 QKLTTSWISNGKRDYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLPAGKSLEFVYIHTANAADVSVSAYTLA 422
            QK+T+SW+S G+  YRYST V NKS++ LK+L LSI  LYGP+WGL+  GN++G PSW+++LP+GKSLEFVYIH+   A+V+VS+YTLA
Sbjct:  532 QKITSSWVSKGRTYYRYSTTVINKSSRPLKSLNLSIKNLYGPIWGLSRSGNSFGLPSWMHSLPSGKSLEFVYIHSTTPANVAVSSYTLA 620          
BLAST of CK740288 vs. ExPASy Swiss-Prot
Match: GUN2_ORYSJ (Endoglucanase 2 OS=Oryza sativa subsp. japonica GN=GLU5 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  153 QQKLTTSWISNGKRDYRYSTIVTNKS---AKTLKNLKLSISKLYGPLWGLTNLGN-AYGFPSWLNNLPAGKSLEFVYIHTANAADVSVSAYTL 419
            +QK T SW  +G+  +RY+  V+N+S    KT++ L + I KLYGP+WGL       Y  PSW  +LPAG+S  FVY+H A  ADV V+ Y L
Sbjct:  547 EQKATASWEKDGRTYHRYAVTVSNRSPAGGKTVEELHIGIGKLYGPVWGLEKAARYGYVLPSWTPSLPAGESAAFVYVHAAPPADVWVTGYKL 639          
BLAST of CK740288 vs. ExPASy Swiss-Prot
Match: GUN5_ARATH (Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  162 LTTSWISNGKRDYRYSTIVTNKSAKTLKNLKLSISKLYGPLWGLTNLGNAYGF--PSWLNNLPAGKSLEFVYIHTANAADVSVSAY 413
            +T++WI+   R YR+  I+ N S K + +LKL I  L GP+WGL   G  Y +  P W   L AG++ +FVY+     A VSV +Y
Sbjct:  541 ITSNWIAGNTRYYRHKVIIKNNSQKPISDLKLKIEDLSGPIWGLNPTGQKYTYQLPQWQKTLRAGQAYDFVYVQGGPQAKVSVLSY 626          
BLAST of CK740288 vs. ExPASy Swiss-Prot
Match: GUN15_ORYSJ (Endoglucanase 15 OS=Oryza sativa subsp. japonica GN=Os05g0212300 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  153 QQKLTTSWISNGKRDYRYSTIVTNKS-AKTLKNLKLSISKLYGPLWGLTNLGNAYGFPSWLNNLPAGKSLEFVYIHTANA-ADVSVSAYTL 419
            +Q +T +W    +  YRY+  VTN+S  KT++ L L +S L G LWGL      Y  P WL  L  G+SL FVY+  A A A++ V+ Y L
Sbjct:  538 EQNVTGTWARRRRTYYRYAVTVTNRSRGKTVRELHLGVSGLRGRLWGLEEARYGYVPPRWLPALRPGRSLRFVYVQPAPAPANIWVTGYKL 628          
The following BLAST results are available for this feature:
BLAST of CK740288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GUN19_ARATH2.703e-2964.77Endoglucanase 19 OS=Arabidopsis thaliana GN=At4g11... [more]
GUN6_ARATH7.863e-2961.80Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g643... [more]
GUN2_ORYSJ9.018e-1746.24Endoglucanase 2 OS=Oryza sativa subsp. japonica GN... [more]
GUN5_ARATH3.546e-1340.70Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g489... [more]
GUN15_ORYSJ4.335e-1141.76Endoglucanase 15 OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6431 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740288 ID=CK740288; Name=CK740288; organism=Citrus sinensis; type=EST; length=462bp
CGGAGGTTACAACCAGCTTCTTCCAGTGATTGTTCCAGCTGCTACTCCTG
TTGTCACTAAACCGAAGTCCAGCACCAAAACCAAAAACTATTCCACCTAC
AAAACCCAAAACAACTCCAGCTCCAGCTTCATCATCTGGTGCTATTGCCA
TACAGCAGAAGCTGACAACTTCTTGGATCTCCAATGGAAAAAGGGACTAC
AGATATTCGACCATAGTGACCAACAAGTCAGCCAAGACCCTCAAGAATCT
GAAGCTTTCAATATCCAAGCTGTATGGTCCTCTATGGGGTCTAACAAATC
TTGGCAATGCTTATGGTTTCCCATCATGGCTCAACAACTTGCCTGCTGGA
AAAAGTCTTGAATTCGTCTACATCCATACTGCTAATGCTGCAGATGTCTC
AGTTTCTGCTTACACATTGGCATAAAAAAGAAAAACAACTATTACACATA
AAGAATCTCATG
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