CK740320

Overview
NameCK740320
Unique NameCK740320
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length376
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1451 contig Csv1_Contig1451:1..376. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740320 vs. ExPASy Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  115 MSRRPVSSTRRLVDTGSFPFTGALQSKSRXXXXXXXXXXXXXXXXXXXYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKA 375
            M+RR V STRR+ D GSFPF GAL SKSR                   YA+SG GIF   K  VS++ GD+SCT+E+QRAIP+LKKA
Sbjct:    1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSIK-EVSKVTGDYSCTAEVQRAIPVLKKA 86
The following BLAST results are available for this feature:
BLAST of CK740320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3972_ARATH1.582e-1652.87Uncharacterized protein At3g49720 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6464 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740320 ID=CK740320; Name=CK740320; organism=Citrus sinensis; type=EST; length=376bp
GCACAGATCTAAGATCTATAACATCCGCTCAATGCTGTCCTCTTATTTCT
CGATCTAAGCTGAACTCTCAATTCGCATCGCTCTCTTCAATCACCATCAC
CTCATTAATCAGTCATGTCGAGGCGTCCTGTGAGTTCAACTCGCCGATTA
GTCGACACTGGAAGCTTTCCTTTTACTGGAGCTTTGCAGTCCAAATCCCG
ATCTTCACCTCTCCTATCCGTCGGCCTTGTCCTCGTGGGAGCATTCCTTC
TTATCGGCTATGCTTTCAGCGGCTCGGGTATATTTGGAGGCGATAAAGCA
GCTGTTAGTAGGATCGAAGGTGACTTTTCTTGCACATCAGAAATCCAAAG
AGCTATACCTATTCTAAAGAAAGCAT
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